1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AACCTGGAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAGgtattggtggtttctgtttgaacattagcgtaacttcatatctgctagtggccataaccacatgacttttccttccttttgctccag
species | Zea mays |
transcript | GRMZM2G079538_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAG GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGEST: gi|149074999|gb|EE163468.2|EE163468
genomic: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAGgtattggtgg ... tttgctccagGTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG
EST: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAG GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGEST: gi|32808216|gb|CD960450.1|CD960450
genomic: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAGgtattggtgg ... tttgctccagGTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG
EST: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAG GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGEST: gi|7145229|gb|AW506710.1|AW506710
genomic: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAGgtattggtgg ... tttgctccagGTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG
EST: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAG GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGEST: gi|29576970|gb|CB617082.1|CB617082
genomic: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAGgtattggtgg ... tttgctccagGTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG
EST: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAG GTCACTATAGATGTCGCAAGTCCTGAGGCTGGAGTTATTGAAAAG
genomic: GAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAGgtattggtgg ... tttgctccagGTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTGGAGACAGAGTCGAGGCTGATGAACCTATAGCGCAGATTGAAACTGATAAGgtattggtggtttctgtttgaacattagcgtaacttcatatctgctagtggccataaccacatgacttttccttccttttgctccag
- - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - GCAGAT