Sequence
atgc intronic sequence ATGC exonic sequenceAGAGGAGTTAGGCAAGACATCTAGTGTTGATGCAAGGTTACCTTCAAGCTCTGATACTGCAGTTATCATGTATACAAGCGGAAGTACTGGTCTTCCCAAGgtatactgttgatcaaagattttgcaatttcttatgcattcgtaatcttgtaatctgaataaacatgaataaaaatgataaaaggctctggttctgtata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G079236_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 4
AGAGGAGTTAGGCAAGACATCTAGTGTTGATGCAAGGTTACCTTCAAGCTCTGATACTGCAGTTATCATGTATACAAGCGGAAGTACTGGTCTTCCCAAGgtatactgttgatcaaagattttgcaatttcttatg-cattcgtaatcttgtaatctga---ataaacatgaataaaaatgataaaaggctctggttctgtata
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TGAAGAATTGGGTAAAACATCACATACAGATGCAAGATTACCTTCAAGCACTGATACTGCAGTTATTATGTATACAAGTGGAAGTACGGGTCTTCCCAAGgtacacttgtgctcaaagatattctgattttttctgtcatatgctgttatctatttttattcatgaaaataaataaggacaaaagcaggggtca-ttcttt---
upper sequence: GRMZM2G079236_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 4
AGAGGAGTTAGGCAAGACATCTAGTGTTGATGCAAGGTTACCTTCAAGCTCTGATACTGCAGTTATCATGTATACAAGCGGAAGTACTGGTCTTCCCAAGgtatactgttgatcaaagattttgcaatttcttatgcattcgtaatcttgtaatctgaataaacatgaataaaaatgataaaaggctctggttctgtata--
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TGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGgtttgtttcttgttcaagttgtggagaaatctaaaaatatcctaaactttc--tcctcattaatatccctcaattttctcctaattacatttaatacataatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32846288|gb|CD985969.1|CD985969EST: ACTGGTCTTCCCAAG GGTGTAATGATCACACATGGCAACATGGTGGCCACAACTGCAGCAGTCATG
genomic: ACTGGTCTTCCCAAGgtatactgtt ... tttgatgtagGGTGTAATGATCACACATGGCAACATGGTGGCCACAACTGCAGCAGTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGGAGTTAGGCAAGACATCTAGTGTTGATGCAAGGTTACCTTCAAGCTCTGATACTGCAGTTATCATGTATACAAGCGGAAGTACTGGTCTTCCCAAGgtatactgttgatcaaagattttgcaatttcttatgcattcgtaatcttgtaatctgaataaacatgaataaaaatgataaaaggctctggttctgtata
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