1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCCGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATTGTCTGTGAAAACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcacacgtttttctgtttcctttgacattatgatttcagaagtaattctgtccagtttaccatgcatcttccctcgcatctatggtctgatgacaacttctatttgacattcttatgtttacag
species | Zea mays |
transcript | GRMZM2G078839_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|32932813|gb|CF037625.1|CF037625
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGGEST: gi|37379237|gb|CF626354.1|CF626354
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|149106149|gb|EE291827.2|EE291827
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGGCAATTCTTGAAAGCEST: gi|84976819|gb|DW475241.1|DW475241
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: GTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|29946371|gb|CB816117.1|CB816117
genomic: GTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|71431176|gb|DR812226.1|DR812226
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|71443317|gb|DR824367.1|DR824367
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|76016568|gb|DT943738.1|DT943738
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCANGTAGCTGCGTAGCCCATTTCT-GAAAGEST: gi|211030346|gb|FL424791.1|FL424791
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATT-CTTGAAAG
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|71431175|gb|DR812225.1|DR812225
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|16916530|gb|BM072882.1|BM072882
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|16927534|gb|BM080603.1|BM080603
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|31911224|gb|CD651817.1|CD651817
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|40337583|gb|CK371653.1|CK371653
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|74234972|gb|DT642886.1|DT642886
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|86469535|gb|DY235905.1|DY235905
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|94479251|gb|EB708209.1|EB708209
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGATGCCAGAG ATTTGTCAGAGCCTTTTCGGGCAGGTAGGTGGGTAGCCAATTCTTGAAAGCEST: gi|91050459|gb|EB160877.1|EB160877
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|15426825|gb|BI542647.1|BI542647
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|71443402|gb|DR824452.1|DR824452
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCT-GAAAGCEST: gi|29946284|gb|CB816072.1|CB816072
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGCEST: gi|4388055|gb|AI491227.1|AI491227
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
EST: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG ATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
genomic: ACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcaca ... atgtttacagATTCGTCAGAGCCTTTTCGGGCAGGTAGCTGCGTAGCCAATTCTTGAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATTGTCTGTGAAAACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAGgtaagtcacacgtttttctgtttcctttgacattatgatttcagaagtaattctgtccagtttaccatgcatcttccctcgcatctatggtctgatgacaacttctatttgacattcttatgtttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC