Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCGAAGAGGGCTGAAAGGGATGga

Basic information

species Zea mays
transcript GRMZM2G077607_T05
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148986662|gb|EE030442.2|EE030442
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71766162|gb|DR964099.1|DR964099
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|86474504|gb|DY240874.1|DY240874
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149001201|gb|EE038471.2|EE038471
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|91055118|gb|EB165536.1|EB165536
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148939787|gb|EC884487.2|EC884487
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|78080307|gb|DV508719.1|DV508719
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71764405|gb|DR962342.1|DR962342
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|110522399|gb|EE026583.1|EE026583
EST:     GAAGCGAAGAGGGCTGAAAGGGATGG                         A
genomic: GAAGCGAAGAGGGCTGAAAGGGAT-Gga ... ga-ga ... gaGAGCATG
EST: gi|110522399|gb|EE026583.1|EE026583
EST:     GAAGCGAAGAGGGCTGAAAGGGATGG                         A
genomic: GAAGCGAAGAGGGCTGAAAGGGAT-Gga ... ga-ga ... gaGAGCATG
EST: gi|148956370|gb|EC902184.2|EC902184
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149104291|gb|EE289730.2|EE289730
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71775438|gb|DR973316.1|DR973316
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|78110504|gb|DV528914.1|DV528914
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149101066|gb|EE187165.2|EE187165
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|76281284|gb|DV020852.1|DV020852
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148961771|gb|EE012548.2|EE012548
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|93283758|gb|EB676022.1|EB676022
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149080427|gb|EE169450.2|EE169450
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149110620|gb|EE294219.2|EE294219
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71434244|gb|DR815294.1|DR815294
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71440678|gb|DR821728.1|DR821728
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71317318|gb|DR795348.1|DR795348
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71760606|gb|DR958543.1|DR958543
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148928285|gb|EE284886.2|EE284886
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149102953|gb|EE288307.2|EE288307
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|76914201|gb|DV165443.1|DV165443
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71433799|gb|DR814849.1|DR814849
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148945559|gb|EC890812.2|EC890812
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149084716|gb|EE174208.2|EE174208
EST:     GAAGCGAAGAGGGCTGAAAGGGATGG                         A
genomic: GAAGCGAAGAGGGCTGAAAGGGAT-Gga ... ga-ga ... gaGAGCATG
EST: gi|149084716|gb|EE174208.2|EE174208
EST:     GAAGCGAAGAGGGCTGAAAGGGATGG                         A
genomic: GAAGCGAAGAGGGCTGAAAGGGAT-Gga ... ga-ga ... gaGAGCATG
EST: gi|148963705|gb|EE014773.2|EE014773
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148987354|gb|EE031196.2|EE031196
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|101402571|gb|EB822834.1|EB822834
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|14244188|gb|BG842258.2|BG842258
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|91878131|gb|EB408088.1|EB408088
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|50331099|gb|CO526225.1|CO526225
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|38687645|gb|CK144676.1|CK144676
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|101395953|gb|EB819903.1|EB819903
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149021603|gb|EE154455.2|EE154455
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|101385894|gb|EB814995.1|EB814995
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|71756828|gb|DR954765.1|DR954765
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148951901|gb|EC897677.2|EC897677
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|88753314|gb|DY537455.1|DY537455
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149103379|gb|EE288765.2|EE288765
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149106408|gb|EE292135.2|EE292135
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148953834|gb|EC899210.2|EC899210
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149078211|gb|EE166966.2|EE166966
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149058026|gb|EE156710.2|EE156710
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148933575|gb|EC877445.2|EC877445
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148933726|gb|EC877642.2|EC877642
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|78079039|gb|DV507451.1|DV507451
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148961303|gb|EE012028.2|EE012028
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148958433|gb|EC904667.2|EC904667
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|76282270|gb|DV021838.1|DV021838
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|149073840|gb|EE162161.2|EE162161
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148963706|gb|EE014774.2|EE014774
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148997313|gb|EE035808.2|EE035808
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|50337368|gb|CO532494.1|CO532494
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|148995104|gb|EE034396.2|EE034396
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|76908493|gb|DV162968.1|DV162968
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG
EST: gi|91874845|gb|EB404802.1|EB404802
EST:     GAAGCGAAGAGGGCTGAAAGGGATG                         GAGAGCATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGGGCAGCCA
genomic: GAAGCGAAGAGGGCTGAAAGGGATGga ... gaGAG--CATGGACAGCGACTCGGAGTAATAAGGTGGAGGCGCGGCGCAGCCATCTTCCATGGGGGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCGAAGAGGGCTGAAAGGGATGga

-  CGAAGA
- -  AAGAGG