1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAACTCGAGAAACCAGCCCTACTTTCATCATTGGGAAGTTTGATGGAATTCTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattgatttttcatttatacataatgtcaaaactcaaatcactgcatttctgttccttgatcatttctctgttggatggaccaaacag
species | Zea mays |
transcript | GRMZM2G077233_T06 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTG GCAGANNATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTGEST: gi|67034446|gb|CO462996.1|CO462996
genomic: TTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
EST: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTG GCAGAGTATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTGEST: gi|13125876|gb|BG316446.1|BG316446
genomic: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
EST: TTGG-CTCGGA-TTCCTGAAA-TTCTGTAGGAGGAGCCCCTCCAATTTG GCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTGTTTCTGEST: gi|211541914|gb|FL379334.1|FL379334
genomic: TTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
EST: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTG GCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTGEST: gi|76291015|gb|DV030583.1|DV030583
genomic: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
EST: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTG GCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTGEST: gi|76289740|gb|DV029308.1|DV029308
genomic: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
EST: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTG GCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTGEST: gi|211373714|gb|FL377783.1|FL377783
genomic: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
EST: CTTGGTCTCGGATTTTCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTG GCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTTCTCTTTCTEST: gi|101393193|gb|EB818527.1|EB818527
genomic: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTT-CTCTTTCT
EST: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTG GCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
genomic: CTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattg ... gaccaaacagGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGATGTCTTCTCTTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTCGAGAAACCAGCCCTACTTTCATCATTGGGAAGTTTGATGGAATTCTTGGTCTCGGATTTCCTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGgtatggattgatttttcatttatacataatgtcaaaactcaaatcactgcatttctgttccttgatcatttctctgttggatggaccaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG