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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAGgcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccataggcctag

Basic information

species Zea mays
transcript GRMZM2G077222_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g64400.1 (Oryza sativa), 5'ss of exon 5
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAG-
     ||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||  |||||||||||| ||||||||||||    | || || | || |  ||  |      |  |||    ||| |   |  | ||    |||||  |||  |     || ||||||  ||||||      
ACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAACTTGCCTTTGATGATATCACACCTGAAGATTTTGATTTTCCATTTATACAAGgtgagaagagaatagtgttgaggacaaactacatctttagtaaaatttactatgttttcatgaactaatgatatttgtacatctttcaatatgcccatag------

upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 9
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAG-
      |||||||||||||| || ||||| || || ||||| ||||| ||||||||||| |||||||  || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| ||| | ||   ||     | |  ||  | |      ||  ||    | ||  ||| ||||  ||      ||
ACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatca---taattttttttaacaat--acaacttgttcctctactcattctgtctaaataatatcaa-atattgat--tttcag

upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 5
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAG-
      |||||||||||||| || |||||||| || ||||  ||||| ||||||||||| |||||||| || || || ||||||||| | | ||| |||||| ||  || | |   |   ||| |||    |      |     |   |||  |   ||    |  |  |    || |||||  ||    ||      
ACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATTCAAGgtcagtacaggacatcataataattttt--aacaatacaacttgttgctatactcatattctgtctaaataatatcaaatattgattttcag------

upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 5'ss of exon 5
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAGgcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccataggcctag
     ||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| ||| | || || ||||| ||||||||| | | ||| |||||||||      ||   |  |  | || |    | |     ||   |  ||   |  |  |  |   |  || || ||                  
ACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATTCAAGgtgagagtgaactttgaattttgattctacccgaaaagaagataaacaatgaagctaaattctgtttactcttttcag-----------------

upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 5'ss of exon 6
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAG-
      |||||||| ||||| || |||||||| || ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||     | || | | | |   | | | | | || || || ||||||   |||| || |||| |  ||  |     || || |  ||   ||||      
TCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATTCAAGgtgatcatcgaattttttgtacattcactctgaagtctgaatcagtgaa--gttat-gtttaatctgctttcttcatttttcattggatagtatag------

upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 6
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAGgcatgtctcgaagct---aagtttatgtatggat-tagtgaatcattattgtgta---atgtcattcatgtt----cattccaatatatc-cataggcctag---------
      ||||| || |||||||| ||||| || |  ||| | ||||||||||||||||| ||| | ||||||||||| ||||||||| ||| ||| ||||||||    ||  || || ||    || ||   |   ||| |||  |     |||||| |    ||| | ||  | ||    ||||   |  | || ||      | |         
ACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAGgtgataattgattctaaacttttgagcttcgatgatgatatagaaagatcctattgtttggatatgccctttgttttgttgcattaagagttttctcactaagttggatgtttcag

upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ31569 (Selaginella moellendorffii), 5'ss of exon 2
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAGgcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccataggcctag
       | ||||| | ||| ||||||||||| || || || || |||  ||| || ||||||||  | ||||| ||||| ||||||||||||||||||||| |    | |||     | |       || ||    |||| |   ||                                               
ACGGGTGCTAAAGTCTCTCCTGCAATGTATATCGAAAAAGTTACAGAAGCTGCGTTCGACGATGTTTCGCCTGAGGATCCGGATTTTCCATTCATACAAGgttaca-gtttcttcgtaccagacgctcgtttga--cagtggacgtttgag--------------------------------------------

upper sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ38581 (Selaginella moellendorffii), 5'ss of exon 3
-----CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAGgcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccataggcctag
       | ||||| | ||| ||||||||||| || || || || |||  ||| || ||||||||  | ||||| ||||| ||||||||||||||||||||| |    | |||  |  | |       || ||    |||| |   ||                                               
ACGGGTGCTAAAGTCTCTCCTGCAATGTATATCGAAAAAGTTACAGAAGCTGCGTTCGACGATGTTTCGCCTGAGGATCCGGATTTTCCATTCATACAAGgttaca-gtttcttcataccagacgctcgtttga--cagtggacgtttgag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211155347|gb|FL193257.1|FL193257
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211505017|gb|FL316062.1|FL316062
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211265615|gb|FL356056.1|FL356056
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211001384|gb|FL323102.1|FL323102
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211308384|gb|FL348182.1|FL348182
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211155354|gb|FL193264.1|FL193264
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211464944|gb|FL327919.1|FL327919
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211143697|gb|FL324988.1|FL324988
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211287060|gb|FL337502.1|FL337502
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211155352|gb|FL193262.1|FL193262
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211155344|gb|FL193254.1|FL193254
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211388119|gb|FL310430.1|FL310430
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211541249|gb|FL353983.1|FL353983
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|31357653|gb|CD442010.1|CD442010
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211012723|gb|FL335935.1|FL335935
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTA--A-GCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211183895|gb|FL345854.1|FL345854
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211163533|gb|FL327752.1|FL327752
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211465954|gb|FL364649.1|FL364649
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211239604|gb|FL338007.1|FL338007
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211153739|gb|FL193240.1|FL193240
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211478133|gb|FL352004.1|FL352004
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211130568|gb|FL330782.1|FL330782
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211320240|gb|FL338455.1|FL338455
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211093607|gb|FL328988.1|FL328988
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211155342|gb|FL193252.1|FL193252
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211356808|gb|FL332694.1|FL332694
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211155346|gb|FL193256.1|FL193256
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211158735|gb|FL327705.1|FL327705
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211356810|gb|FL332696.1|FL332696
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211133468|gb|FL349783.1|FL349783
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211480395|gb|FL326614.1|FL326614
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211432079|gb|FL309133.1|FL309133
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211509614|gb|FL308773.1|FL308773
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211534207|gb|FL317060.1|FL317060
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211297774|gb|FL337584.1|FL337584
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211096961|gb|FL367333.1|FL367333
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211025945|gb|FL329790.1|FL329790
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211285077|gb|FL334450.1|FL334450
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211243597|gb|FL313136.1|FL313136
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211155351|gb|FL193261.1|FL193261
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211453287|gb|FL343581.1|FL343581
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211455408|gb|FL343588.1|FL343588
EST:     GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCT-AG                         CAGAAGCTGGATTGATTTCTAG-AAGCTTTCAAGATCTGATATGAATATC
genomic: GACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGG--TGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
EST: gi|211153750|gb|FL193251.1|FL193251
EST:     TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGCCTAG                         CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC
genomic: TGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTG-AGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 2

CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAGgcatgtctcg ... ataggcctagCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGGTGAGgcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccataggcctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA