1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACAGACAGAAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatccatacttaattcaaggattccacaagactattctatgttatttcttaagatattcattaggaattgtaggttgtatgtgcagcttggatttccttaatgaagcttcag
species | Zea mays |
transcript | GRMZM2G075551_T03 |
intron # | 5 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|78121467|gb|DV539851.1|DV539851
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|76282171|gb|DV021739.1|DV021739
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AACGTGAACAACAACGAGAAGAGAAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|74244524|gb|DT652438.1|DT652438
genomic: AACGTGAACAACAACGAGAAGAG-AAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AACGTGAAACA-CAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCEST: gi|60358695|gb|DN225668.1|DN225668
genomic: AACGTGAA-CAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|71324315|gb|DR798858.1|DR798858
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|71324316|gb|DR798859.1|DR798859
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGEST: gi|71422269|gb|DR805671.1|DR805671
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAG
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|71433464|gb|DR814514.1|DR814514
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|93281363|gb|EB673627.1|EB673627
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|71322954|gb|DR798154.1|DR798154
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|86470692|gb|DY237062.1|DY237062
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|76283407|gb|DV022975.1|DV022975
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGGTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGACEST: gi|76011266|gb|DT938436.1|DT938436
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGCAGAAGGATAAGCAAGAAAAGTCAGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACAGACAGAAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatccatacttaattcaaggattccacaagactattctatgttatttcttaagatattcattaggaattgtaggttgtatgtgcagcttggatttccttaatgaagcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT