1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACAGACAGAAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatccatacttaattcaaggattccacaagactattctatgttatttcttaagatattcattaggaattgtaggttgtatgtgcagcttggatttccttaatgaagcttcag
species | Zea mays |
transcript | GRMZM2G075551_T02 |
intron # | 5 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: AACGTGAAACA-CAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAGGAAGCAGCEST: gi|71324316|gb|DR798859.1|DR798859
genomic: AACGTGAA-CAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAGGAAGCAGC
EST: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACT TGCGGATGCTCATAG
genomic: AAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatcc ... gaagcttcagTGCGGATGCTCATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACAGACAGAAACGTGAACAACAACGAGAAGAGAAGGAGCTGGCAAAAATTGCTCAACTgtatccatccatacttaattcaaggattccacaagactattctatgttatttcttaagatattcattaggaattgtaggttgtatgtgcagcttggatttccttaatgaagcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT