1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCTGAGGACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatttcttggcaccatatgcttattattagtgaaaagtcttagggcatgtataatgcgtgtcttgagttgtgtcttcgaatgtatctatgg...
species | Zea mays |
transcript | GRMZM2G074687_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCEST: gi|211279487|gb|FL438453.1|FL438453
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTC
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|32846103|gb|CD985784.1|CD985784
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|58029459|gb|CX724886.1|CX724886
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|67010625|gb|CO439374.1|CO439374
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|32945066|gb|CF049885.1|CF049885
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|33093136|gb|CF053130.1|CF053130
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|4837470|gb|AI670560.1|AI670560
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|211311765|gb|FL424550.1|FL424550
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAGEST: gi|60672264|gb|DN475030.1|DN475030
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tacttttcagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGAGGACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatttcttggcaccatatgcttattattagtgaaaagtcttagggcatgtataatgcgtgtcttgagttgtgtcttcgaatgtatctatgg
- - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC