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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACTGGTTATAGTGCTCAGGGAACGGGATCTACTTTGATTATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctgcacatttatatcttctgtgtgtttctcgcggtggttctgttcaatgagcacctatttaatcaaatttgcattcacaaatataagtgaatggtgactacaaataacgctaacagcagatagcctaagaaatcttttcaatgtgcacag

Basic information

species Zea mays
transcript GRMZM2G074386_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 5
GAGAACTGGTTATAGTGCTCAGGGAACGGGATCTACTTTGATTATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaag-ccctgcacattta------tatcttctg-tgtgtttctcgcggt-ggttctgttcaatgagcacctatttaatcaaatttgca--ttca-----caaatataagtgaatggt-gactacaaataacgctaacagcagatagcctaagaaatcttttcaatgtgcacag
||| ||||| || ||||| |||||||| |||||| ||||||| |||||||| |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| | ||| |  ||||      | |   |||   |||   |   | | | |  |||    ||| || ||  || ||   |  ||||  || |     ||   | || | | || |  ||| |  ||     || |  ||  ||| |  |  ||| |||   |||    |||
GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatcatctggttgatttgacatgcaagtttatgtgccacccagaaataagtgctcaactgctgatttgaatagctccac-tagtcctaagaatatttctgatgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211399901|gb|FL244537.1|FL244537
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATC
EST: gi|211399900|gb|FL244536.1|FL244536
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGC-AGG                         GATGCTG-CACACCATTG-CGGAGTCAGAG-CCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|86470251|gb|DY236621.1|DY236621
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|19436694|gb|BM953104.1|BM953104
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATGGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|211287478|gb|FL244420.1|FL244420
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCC
EST: gi|30087522|gb|CB885728.1|CB885728
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|60337848|gb|DN204821.1|DN204821
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|211298181|gb|FL244493.1|FL244493
EST:     TCCTGGACA-TCAACTAAAATCACCNAGTCCTCTATTGCTCCCTGGCAGG                         GATGCTGTCACACCAT-GTCGGAGTCAGAG-CCATCGATCTA
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTA
EST: gi|211287481|gb|FL244423.1|FL244423
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCAC
EST: gi|211296044|gb|FL244478.1|FL244478
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGA
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGA
EST: gi|211300319|gb|FL244504.1|FL244504
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCTCACCATTGTCGGAGCCAGAGGC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGC
EST: gi|211302454|gb|FL244516.1|FL244516
EST:     TCCTGGACAATCAACTANNATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGGCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|211289619|gb|FL244432.1|FL244432
EST:     TCCTGGACNATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTA
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTA
EST: gi|211291756|gb|FL244444.1|FL244444
EST:     CTGGACAATNNCA-CTAAA-TCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTC
genomic: CTGGACAAT--CAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTC
EST: gi|211296051|gb|FL244485.1|FL244485
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATC
EST: gi|19436261|gb|BM952671.1|BM952671
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATGGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|9461570|gb|BE453798.1|BE453798
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGCTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|14242727|gb|BG840578.2|BG840578
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|211423763|gb|FL057576.1|FL057576
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         NATGCTGTCACACCATTGTCGGAGTCAGAAGCCATCGATCTAAATTAAGGA
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAG-TTAAGGA
EST: gi|13125904|gb|BG316579.1|BG316579
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATT
EST: gi|31364563|gb|CD448918.1|CD448918
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|211402443|gb|FL244546.1|FL244546
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|28873781|gb|CB329723.1|CB329723
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATT
EST: gi|211293907|gb|FL244467.1|FL244467
EST:     CCTGGACAAATCA-CTAAAATCAC-AAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCAT
genomic: CCTGGACAA-TCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCAT