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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACTGGTTATAGTGCTCAGGGAACGGGATCTACTTTGATTATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctgcacatttatatcttctgtgtgtttctcgcggtggttctgttcaatgagcacctatttaatcaaatttgcattcacaaatataagtgaatggtgactacaaataacgctaacagcagatagcctaagaaatcttttcaatgtgcacag

Basic information

species Zea mays
transcript GRMZM2G074386_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 5
GAGAACTGGTTATAGTGCTCAGGGAACGGGATCTACTTTGATTATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaag-ccctgcacattta------tatcttctg-tgtgtttctcgcggt-ggttctgttcaatgagcacctatttaatcaaatttgca--ttca-----caaatataagtgaatggt-gactacaaataacgctaacagcagatagcctaagaaatcttttcaatgtgcacag
||| ||||| || ||||| |||||||| |||||| ||||||| |||||||| |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| | ||| |  ||||      | |   |||   |||   |   | | | |  |||    ||| || ||  || ||   |  ||||  || |     ||   | || | | || |  ||| |  ||     || |  ||  ||| |  |  ||| |||   |||    |||
GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatcatctggttgatttgacatgcaagtttatgtgccacccagaaataagtgctcaactgctgatttgaatagctccac-tagtcctaagaatatttctgatgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149016788|gb|EE154282.2|EE154282
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|45847129|gb|CN071072.1|CN071072
EST:     TCCTGGACAATCAACTAAAATCCCCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|71428371|gb|DR809421.1|DR809421
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|30087522|gb|CB885728.1|CB885728
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|31362426|gb|CD446783.1|CD446783
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|32938641|gb|CF043460.1|CF043460
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAAG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|149088717|gb|EE177839.2|EE177839
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTTTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|78106986|gb|DV525404.1|DV525404
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|17930931|gb|BM267891.1|BM267891
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|32938447|gb|CF043266.1|CF043266
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAAG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|7135769|gb|AW498256.1|AW498256
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|67031178|gb|CO459927.1|CO459927
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|74239718|gb|DT647632.1|DT647632
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|12968327|gb|BG265273.1|BG265273
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|24769350|gb|CA404479.1|CA404479
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|149111500|gb|EE295003.2|EE295003
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|32847010|gb|CD986691.1|CD986691
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAAG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|16926492|gb|BM079560.1|BM079560
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|60352481|gb|DN219454.1|DN219454
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|61118932|gb|DN559893.1|DN559893
EST:     TCCTGGACAATCAGCTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|14717546|gb|BI245196.1|BI245196
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|14243859|gb|BG841581.2|BG841581
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|17932205|gb|BM269165.1|BM269165
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|76013087|gb|DT940257.1|DT940257
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|40302852|gb|CK347239.1|CK347239
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|74240043|gb|DT647957.1|DT647957
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|60340468|gb|DN207441.1|DN207441
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAAG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|78109496|gb|DV527912.1|DV527912
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
EST: gi|14243256|gb|BG840908.2|BG840908
EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaagccctg ... atgtgcacagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAT