1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAAGCTAACAAACCTCCAGACAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAGgtaaattgcttctaacaactaattatacatttcatttctcttttagagatcgttttgttgaatgaccatgtagcaaattcttaattaattggttatttcataagtacttgttccgaacttctgatgatggttttcttttgcag
species | Zea mays |
transcript | GRMZM2G074351_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAG ATTGTAGAGACATTTTCCAAGTGTGGAATAATAAAGGAGGAEST: gi|40302927|gb|CK347314.1|CK347314
genomic: ACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAGgtaaattgct ... tcttttgcagATTGTAGAGACATTTTCCAAGTGTGGAATAATAAAGGAGGA
EST: ACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAG ATTGTAGAGACATTTTCCAAGTGTGGAATAATAAAGGAGEST: gi|211475994|gb|FL018626.1|FL018626
genomic: ACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAGgtaaattgct ... tcttttgcagATTGTAGAGACATTTTCCAAGTGTGGAATAATAAAGGAG
EST: ACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAG ATTGTAGAGACATTTTC
genomic: ACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAGgtaaattgct ... tcttttgcagATTGTAGAGACATTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCTAACAAACCTCCAGACAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACATAACTGGTTTACCTGATGATGTTACAGTGGAGGAGgtaaattgcttctaacaactaattatacatttcatttctcttttagagatcgttttgttgaatgaccatgtagcaaattcttaattaattggttatttcataagtacttgttccgaacttctgatgatggttttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG