1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCGTGCTGCTCTACGGTCCACCTGGAACTGGGAAGACGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAGgtctggatatttttctagtaacttataacatatattaagcatatgtttattcactgatgtcaccttttaaacag
species | Zea mays |
transcript | GRMZM2G074037_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAG GTGGTGTCAAGTGCTATCATTGATAAATACATTGGTGAAAGTS-ACGCTTAEST: gi|211044167|gb|FL460078.1|FL460078
genomic: CGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAGgtctggatat ... ttttaaacagGTGGTGTCAAGTGCTATCATTGATAAATACATTGGTGAAAGTGCACGCTTA
EST: CGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAG GTGGTGTCAAGTGCTATCATTGATAAATACATTEST: gi|211075772|gb|FL462562.1|FL462562
genomic: CGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAGgtctggatat ... ttttaaacagGTGGTGTCAAGTGCTATCATTGATAAATACATT
EST: CGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAG GTGGTGTCAAGTGCTATCATTGATAAATACATTGGTGAAAGTGCACGCTTAEST: gi|211416916|gb|FL328808.1|FL328808
genomic: CGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAGgtctggatat ... ttttaaacagGTGGTGTCAAGTGCTATCATTGATAAATACATTGGTGAAAGTGCACGCTTA
EST: AGCAACATTGATGCTAATTTTTTGAAG GTGGTGTCAAGTGCTATCATTGATAAATACATTGGTGAAAGTGCACGCTTA
genomic: AGCAACATTGATGCTAATTTTTTGAAGgtctggatat ... ttttaaacagGTGGTGTCAAGTGCTATCATTGATAAATACATTGGTGAAAGTGCACGCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGTGCTGCTCTACGGTCCACCTGGAACTGGGAAGACGCTCCTAGCTAGAGCCATTGCTAGCAACATTGATGCTAATTTTTTGAAGgtctggatatttttctagtaacttataacatatattaagcatatgtttattcactgatgtcaccttttaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG