1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctgttctataactttatatatattcctggcaaaaaaatatagatgtatacgatgtgacttttaattgtcattgatataagcaaaagttcacttaaatgcatttactgctattgacgcag
species | Zea mays |
transcript | GRMZM2G073950_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATACCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|78077685|gb|DV506119.1|DV506119
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|211141683|gb|FL053511.1|FL053511
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATACCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|113702021|gb|EE679525.1|EE679525
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|29130437|gb|CB381141.1|CB381141
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|91056600|gb|EB167018.1|EB167018
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|148953399|gb|EE152896.2|EE152896
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|78081735|gb|DV510147.1|DV510147
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|88758160|gb|DY542301.1|DY542301
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|50324199|gb|CO519325.1|CO519325
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|84908437|gb|DW404315.1|DW404315
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATACCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|60346678|gb|DN213651.1|DN213651
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|148939361|gb|EC883888.2|EC883888
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|78078908|gb|DV507320.1|DV507320
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|71417126|gb|DR803932.1|DR803932
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|71417127|gb|DR803933.1|DR803933
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|29544724|gb|CB605104.1|CB605104
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: CAGGATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|94478259|gb|EB707217.1|EB707217
genomic: CAGGATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTGEST: gi|78077686|gb|DV506120.1|DV506120
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
EST: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAG GCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
genomic: GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctg ... attgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATCAAGAGAAGTTTTATTTCAACCCCGGTGACACTGGCTTTAAGgtgattcctgttctataactttatatatattcctggcaaaaaaatatagatgtatacgatgtgacttttaattgtcattgatataagcaaaagttcacttaaatgcatttactgctattgacgcag
- - - AAGAGA
- - - - AGAAGT