1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaatcttcagacctggccagctgaatactgttttaccataccgatagatgttcaatctgttaatactgatcgtgcaattattacttgtcttggtag
species | Zea mays |
transcript | GRMZM2G073535_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGACCCAGAGCTAGGCCAGEST: gi|32915153|gb|CF019965.1|CF019965
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|32915467|gb|CF020279.1|CF020279
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|166488253|gb|EG202729.1|EG202729
genomic: TTCAGCTCCAAGGTGACCA
EST: TTCAGCTCCAAGGTGATCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG GCTGGGATTGCGEST: gi|211254796|gb|FL420511.1|FL420511
genomic: TTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaa ... gtcttggtagGCTGGGATTGCG
EST: GGACCCAGAGCTAGGCCAGEST: gi|211199110|gb|FL383374.1|FL383374
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|76921765|gb|DV168690.1|DV168690
genomic: TTCAGCTCCAAGGTGACCA
EST: GACCCAGAGCTAGGCCAGEST: gi|28188096|gb|CB179706.1|CB179706
genomic: TCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211433580|gb|FL370258.1|FL370258
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211275053|gb|FL384325.1|FL384325
genomic: TTCAGCTCCAAGGTGACCA
EST: GACCCAGAGCTAGGCCAGEST: gi|211334569|gb|FL404956.1|FL404956
genomic: TCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|91874020|gb|EB403977.1|EB403977
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAAAGCTAGGCCAGEST: gi|211497349|gb|FL428240.1|FL428240
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|32915137|gb|CF019949.1|CF019949
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211360773|gb|FL397053.1|FL397053
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|28930990|gb|CB334351.1|CB334351
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|13315834|gb|BG410386.1|BG410386
genomic: TTCAGCTCCAAGGTGACCA
EST: TTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG GCTGGGATTGCGAAGAAAGAGAACATCAAGATTCGCGGGTTCTAAEST: gi|32915018|gb|CF019830.1|CF019830
genomic: TTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaa ... gtcttggtagGCTGGGATTGCGAAGAAAGAGAACATCAAGATTCACGGGTTCTAA
EST: GGACCCGGAGCTAGGCCAGEST: gi|32864981|gb|CF004663.1|CF004663
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211006247|gb|FL408517.1|FL408517
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211490127|gb|FL369784.1|FL369784
genomic: TTCAGCTCCAAGGTGACCA
EST: GTCATTCAGCTCCAAGGTGATCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGEST: gi|14244595|gb|BG842533.2|BG842533
genomic: GTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaa ... gtcttggtagG
EST: GGACCCAGAGCTAGGCCAGEST: gi|32937269|gb|CF042088.1|CF042088
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGTTAGGCCAGEST: gi|211108516|gb|FL304066.1|FL304066
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|32864386|gb|CF004068.1|CF004068
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211207669|gb|FL419154.1|FL419154
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211042145|gb|FL385023.1|FL385023
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|6021595|gb|AW066523.1|AW066523
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|32865535|gb|CF005217.1|CF005217
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|13490598|gb|BG517362.1|BG517362
genomic: TTCAGCTCCAAGGTGACCA
EST: TTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG GCTGGGATTGCGAAGAAAGAGAACATCAAGATTCACGGGTTCTAAEST: gi|6012307|gb|AW061663.1|AW061663
genomic: TTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaa ... gtcttggtagGCTGGGATTGCGAAGAAAGAGAACATCAAGATTCACGGGTTCTAA
EST: GGACCCACAGCTAGGCCAGEST: gi|211332492|gb|FL407989.1|FL407989
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAGEST: gi|211134617|gb|FL369499.1|FL369499
genomic: TTCAGCTCCAAGGTGACCA
EST: GGACCCAGAGCTAGGCCAG
genomic: TTCAGCTCCAAGGTGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaatcttcagacctggccagctgaatactgttttaccataccgatagatgttcaatctgttaatactgatcgtgcaattattacttgtcttggtag
- - TCAGCT
- - - CAGCTC
- - - - - - - - - - - - GCAAGA