1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTAGATGAGGAGTCTGAACCTCAAGTCGAGAAAGCCAGGGAAAAGATAGTCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataatctttttggcatggattgacattgcttctgttaataattcagcctatatataatccctcccttctccaaaaaagaatgtcatcctgggtt...
species | Zea mays |
transcript | GRMZM2G073404_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|61118633|gb|DN559594.1|DN559594
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|211370522|gb|FL006750.1|FL006750
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGKGTACGCCAAGAAGGCAAAGCTCEST: gi|16377833|gb|BI992136.1|BI992136
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|6993971|gb|AW453185.1|AW453185
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|67014283|gb|CO443032.1|CO443032
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|16920129|gb|BM074514.1|BM074514
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|16919201|gb|BM074084.1|BM074084
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|20507610|gb|BQ279703.1|BQ279703
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|67013821|gb|CO442570.1|CO442570
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|50322317|gb|CO517443.1|CO517443
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|67015419|gb|CO444168.1|CO444168
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|211154210|gb|FL453080.1|FL453080
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|8577459|gb|BE130096.1|BE130096
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCEST: gi|16925180|gb|BM078248.1|BM078248
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAGATGAGGAGTCTGAACCTCAAGTCGAGAAAGCCAGGGAAAAGATAGTCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataatctttttggcatggattgacattgcttctgttaataattcagcctatatataatccctcccttctccaaaaaagaatgtcatcctgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG