1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGTGGTGGTGGAGGCGGACGCGTTCAAGGAGGCGGACGTCATCTACCGCGCCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacgcactacacgctggcgccagatgggctgattcagatagcccattccgtctgtcgatgcactcttccgggggggccctgctgattgctaaatgggctgggctgtccacctgtttgttcccgtgcag
species | Zea mays |
transcript | GRMZM2G070252_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTG GTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGEST: gi|149101143|gb|EE187251.2|EE187251
genomic: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacg ... tcccgtgcagGTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGG
EST: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTG GTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTEST: gi|148952743|gb|EC898724.2|EC898724
genomic: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacg ... tcccgtgcagGTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCT
EST: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTG GTCCACCAGTCGTCGACGGACGCGGCGTCGEST: gi|21760160|gb|BQ635701.1|BQ635701
genomic: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacg ... tcccgtgcagGTCCACCAGTCGTCGACGGACGCGGCGTCG
EST: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTG GTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTGEST: gi|148950843|gb|EC896460.2|EC896460
genomic: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacg ... tcccgtgcagGTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTG
EST: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTG GTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTGEST: gi|26457685|gb|CA829268.1|CA829268
genomic: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacg ... tcccgtgcagGTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTG
EST: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTG GTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTGEST: gi|67020546|gb|CO449295.1|CO449295
genomic: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacg ... tcccgtgcagGTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTG
EST: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTG GTCCACCAGTCGTCGACGGACGCGGCGTCNTCNCTGCTGGTGACGGCGCTG
genomic: CCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacg ... tcccgtgcagGTCCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGTGGTGGAGGCGGACGCGTTCAAGGAGGCGGACGTCATCTACCGCGCCATCAGCTCCATGGGCCACCACAACGACATGCTCCAGACGGCAGAGCTGgtacgcaacgcactacacgctggcgccagatgggctgattcagatagcccattccgtctgtcgatgcactcttccgggggggccctgctgattgctaaatgggctgggctgtccacctgtttgttcccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT