1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTATGATCGAACTAAGTCGTACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtatttttttgtgaaatttcttttcggaaagttgatggctatgatgaacatcattgcaatttatttgcatcaaactaaagcagtgctatttgca...
species | Zea mays |
transcript | GRMZM2G069765_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACACGGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTAEST: gi|211229393|gb|FL136781.1|FL136781
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTA
EST: ACACGGGATGAAGAAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCEST: gi|149105498|gb|EE291023.2|EE291023
genomic: ACACAGGATGAAGAA-GTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211231448|gb|FL136784.1|FL136784
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACGGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGEST: gi|211229383|gb|FL136771.1|FL136771
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATG
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211231450|gb|FL136786.1|FL136786
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229385|gb|FL136773.1|FL136773
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|31354522|gb|CD438879.1|CD438879
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|33097192|gb|CF057152.1|CF057152
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGACGCTACATGTTGCACAGGCATTCATCGEST: gi|211229386|gb|FL136774.1|FL136774
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCG
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|22491088|gb|BU051011.1|BU051011
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|22491149|gb|BU051072.1|BU051072
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|149084479|gb|EE173941.2|EE173941
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGCCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211231451|gb|FL136787.1|FL136787
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: CACAGGATGAANGAAAGT-GGTGATGGCACTACATCTGTCATTGGTCTAG CTGGAGAGATGCTACATGGTGCACAGGCATTCATCGACEST: gi|32865501|gb|CF005183.1|CF005183
genomic: CACAGGATGAA-GAA-GTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGAC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCEST: gi|19351773|gb|BM896305.1|BM896305
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229388|gb|FL136776.1|FL136776
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229381|gb|FL136769.1|FL136769
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATGATCGAACTAAGTCGTACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtatttttttgtgaaatttcttttcggaaagttgatggctatgatgaacatcattgcaatttatttgcatcaaactaaagcagtgctatttgca
- - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAAGT