1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTATGATCGAACTAAGTCGTACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtatttttttgtgaaatttcttttcggaaagttgatggctatgatgaacatcattgcaatttatttgcatcaaactaaagcagtgctatttgca...
species | Zea mays |
transcript | GRMZM2G069765_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|60358233|gb|DN225206.1|DN225206
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229383|gb|FL136771.1|FL136771
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|149082543|gb|EE171738.2|EE171738
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACGGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTAEST: gi|211229393|gb|FL136781.1|FL136781
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTA
EST: ACACGGGATGAAGAAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCEST: gi|211227330|gb|FL136768.1|FL136768
genomic: ACACAGGATGAAGAA-GTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211231448|gb|FL136784.1|FL136784
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACGGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGEST: gi|33097192|gb|CF057152.1|CF057152
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATG
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGACGCTACATGTTGCACAGGCATTCATCGEST: gi|76014861|gb|DT942031.1|DT942031
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCG
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229381|gb|FL136769.1|FL136769
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|22491088|gb|BU051011.1|BU051011
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|19350690|gb|BM895222.1|BM895222
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229385|gb|FL136773.1|FL136773
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211231451|gb|FL136787.1|FL136787
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: CACAGGATGAANGAAAGT-GGTGATGGCACTACATCTGTCATTGGTCTAG CTGGAGAGATGCTACATGGTGCACAGGCATTCATCGACEST: gi|32865501|gb|CF005183.1|CF005183
genomic: CACAGGATGAA-GAA-GTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGAC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCEST: gi|19351773|gb|BM896305.1|BM896305
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229388|gb|FL136776.1|FL136776
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229394|gb|FL136782.1|FL136782
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|87153647|gb|DY398436.1|DY398436
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|31354825|gb|CD439182.1|CD439182
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211229386|gb|FL136774.1|FL136774
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|31354522|gb|CD438879.1|CD438879
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|148949761|gb|EC895244.2|EC895244
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|31354218|gb|CD438575.1|CD438575
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|22491149|gb|BU051072.1|BU051072
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|211231450|gb|FL136786.1|FL136786
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATCEST: gi|149084479|gb|EE173941.2|EE173941
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
EST: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGCCATTGTTCTAG CTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
genomic: TACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtat ... tcttatctagCTGGAGAGATGCTACATGTTGCACAGGCATTCATCGACAAGAACTACCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATGATCGAACTAAGTCGTACACAGGATGAAGAAGTTGGTGATGGCACTACATCTGTCATTGTTCTAGgtatgggtatttttttgtgaaatttcttttcggaaagttgatggctatgatgaacatcattgcaatttatttgcatcaaactaaagcagtgctatttgca
- - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAAGT