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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatcttttctcatcttttgttatttgtatgcttgcttcttctttaataaatttaatttaacagggacaatttaggtcatagctagagactgactagacatggttaattcttctgtttgctaattgcaaacatgctgcag

Basic information

species Zea mays
transcript GRMZM2G069758_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 5
GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatcttttctcatcttttgttatttgtatgcttgcttcttctttaataa--atttaatttaacagggacaatttaggtcatagctagagactgactagacatggttaattcttctgtttgctaattgcaaacatgctgcag
||||||| || || ||||||||||||  |||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||  |||| | |     |   |  | |||  |    |   ||||| | |||| |||||   |||||||||  ||||||| ||   |||  | ||   |||||||||||||        | ||||||
GTTATATTGGATCTGTTTCCTTTTTAACTACTGTACTACAAGTTGTTGACAAATTACGATCAGTCAATCCTGATCTTGTATATGgtaatcttttctcatctttcattatctattcttctctatggtgttttgtctctaccaaattttataggg-caatt-gtgtcatagctcaagactgattacgaatgactgata--tctgtttgctaat-------gttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278750|gb|FL388232.1|FL388232
EST:     GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
EST: gi|60397480|gb|DN230296.1|DN230296
EST:     GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC