Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAAGGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccgacatgcttgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagctggttgtttttctgtgctctgcag

Basic information

species Zea mays
transcript GRMZM2G069102_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAAGGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccgacatgcttgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagctggttgtt-tttctgtgctctgcag
|||||| ||| |||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||| || |||  |||||| || ||||||||| ||  |   | |  ||   |  |  |||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  |||||||      ||  |||   ||||||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag

upper sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAAGGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccgacatgcttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaagaaagctggttgtttttctgtgctctgcag
|||| |||  ||||| || ||| ||||||||||||| ||  | |  || || || ||||||||||||||||||||||||||   ||||||  | |||||||||        ||   |   |   |||| | |   | ||  |    | | ||||  |||  |  |      ||| |  |||       |  |  |  | ||||  |   |||
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472396|gb|EB701354.1|EB701354
EST:     TGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGG                         TCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTGCACAAACATT
genomic: TGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaac ... tgctctgcagTCTGACGATGAACGTGAAATGTGTGCAAGGACTATCTACTGCACAAACATT