1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTCCGGGCTTCTTCTAAGGGTTTGACACTAGAGCTTTGTCGGTGGATTGGCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATGgtgcgttattttttcaaaattttaacatgtgtaattctgttctatcactcaataaaataaccaatattctttgtgtttacag
species | Zea mays |
transcript | GRMZM2G068755_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATG AAAAAGGAGTTGGAAGCAGAGTTGGCAAATGTGTCCGGACTTGCTAAGCCAEST: gi|71441120|gb|DR822170.1|DR822170
genomic: GCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATGgtgcgttatt ... gtgtttacagAAAAAGGAGTTGGAAGCAGAGTTGGCAAATGTGTCCGGACTTGCTAAGCCA
EST: GCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATG AAAAAGGAGTTGEST: gi|18963448|gb|BM660440.1|BM660440
genomic: GCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATGgtgcgttatt ... gtgtttacagAAAAAGGAGTTG
EST: GCAAAGCCCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATG AAAAAGGAGTTGGAAGCAGAGTTGGCAAATGTGTCCGGACTTGCTAAGCCAEST: gi|32934909|gb|CF039721.1|CF039721
genomic: GCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATGgtgcgttatt ... gtgtttacagAAAAAGGAGTTGGAAGCAGAGTTGGCAAATGTGTCCGGACTTGCTAAGCCA
EST: GCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATG AAAAAGGAGTTGGAAGCAGAGTTGGCAAATGTGTCCGGACTTGCTAAGCCA
genomic: GCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATGgtgcgttatt ... gtgtttacagAAAAAGGAGTTGGAAGCAGAGTTGGCAAATGTGTCCGGACTTGCTAAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCCGGGCTTCTTCTAAGGGTTTGACACTAGAGCTTTGTCGGTGGATTGGCAAAGACCCTGTAAAGTCTATTTTATTTGAGAAGATGAGAGATACTATGgtgcgttattttttcaaaattttaacatgtgtaattctgttctatcactcaataaaataaccaatattctttgtgtttacag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG