Sequence
atgc intronic sequence ATGC exonic sequenceAGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgcagttggaagttgcaacgctgcatgcatatcaagtcttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g25734.2 (Oryza sativa), 5'ss of exon 5
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttct--cactgtgctgcagttggaagttgcaacgctgcatgcatatcaagtcttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag
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AAGCTTACTTGTATGATGGTTACTGGGAAGACATTGGTACCATTGAGGCATTCTATAATGCAAATCTGGGAATAACGAAAAAGCCTGTACCAGATTTCAGgtatgctttcaatttttacaccttgctgtggctgaagattatggaatttgaagcatgtgaatttata--------attgtctccttatgatataaaatataccatcaaaatatctgcag
upper sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 5
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgcagttggaagttgcaacgctgcatgcatatcaa--gtcttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag
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AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgta-aattatataggctatt-taatatatcc----atcatattgacaaatgtatttcaacggtagtatattgtggttctgatgtttatgtgttcatgcattttggcatattgattgcag
upper sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgca-gttggaagttgcaacgctgcatgcatatcaagtc-ttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag
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AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgc-gttttggcatattgattgcag----------
upper sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT5G48300.1 (Arabidopsis thaliana), 5'ss of exon 4
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgcagttggaagttgcaacgctgcatg-catatcaagtcttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag
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AAGCTTACCTATATGATGGTTACTGGGAAGACATTGGTACTATAGAGGCATTTTATAACGCTAATCTTGGAATCACCAAGAAACCAGTTCCTGATTTTAGgtacagtaac-cgcattactacactctctattgtatctgaatgattacttaacttatctgaattcttgatgcag--------------------------------------------
upper sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 5
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttca---cttctcactgtg--ctgcagttggaagttgcaacgctgcatgcatatcaagtcttacaatttcaat-tagttcctactgatttagtgttccccttaaatctgaatacag
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AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTTTATAACGCTAATTTGGGGATCACAAAGAAGCCGGTGCCAGATTTCAGgtagttttacagcccatcagactgtatactgtgaattttgatctctgttcaacagtttctttcattaccacatttctgatgcagtttatgata--ttaatatggttttgaacttaaattgcag
upper sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
lower sequence: PP1S2_392V6.1 (Physcomitrella patens), 5'ss of exon 5
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgcagttggaagttgcaacgctgcatgcatatcaagtcttacaatttcaattag-------ttcctactgatttagtgttccccttaaatctgaatacag--------------------------------------------------------
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AAGCGTACTTGTATGATGGCTACTGGGAAGACATCGGTACTATCGAGGCTTTCTACAACGCGAATTTGGGCATCACCAAGAAGCCCGTGCCAGATTTCAGgtgagtagccagcaattagatgaattaaattcaatcgtattgtgatctgcaagttccttttatgacagcctcccttgaacttcgccttttgctaattgcttattattatttaggtatgctgtaggataatccactaaagcaatcattttttcgttaacatgctgctttttgcctcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|56691604|gb|CX129507.1|CX129507EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATGCCAGATTTCAG CTTCTATGACCGTTTTGCTCCAATTTATACACAACCTCGACACCTGCCACC
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttc ... ctgaatacagCTTCTATGACCGTTTTGCTCCAATTTATACACAACCTCGACACCTGCCACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgcagttggaagttgcaacgctgcatgcatatcaagtcttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC