1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACCGGGTTTTGGAGCGCCATGGCGTCCAATCTGACCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttccttccgtcagagtagtaccgctcggccggtgaacactaatgagaactgtctcgtgacgcag
species | Zea mays |
transcript | GRMZM2G066413_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAG GATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTTEST: gi|67024608|gb|CO453357.1|CO453357
genomic: CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttc ... cgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
EST: CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAG GATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTTEST: gi|6672190|gb|AW282363.1|AW282363
genomic: CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttc ... cgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
EST: GAACGTCCTCAGCAAGAAACTCCTTGCCGGTGGCAAG GATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
genomic: GAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttc ... cgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCGGGTTTTGGAGCGCCATGGCGTCCAATCTGACCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttccttccgtcagagtagtaccgctcggccggtgaacactaatgagaactgtctcgtgacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA