1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTACTTGGTGTATTTGAATGGTCTGGTAACAACCCGGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAGgttctgcgttcttttcatcagtgtacataaatctagtatgttataggtgtatatatacattctaccagtcaatggtaaagatctttaagttggtcctaaa...
species | Zea mays |
transcript | GRMZM2G065494_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAG GGAGGATGTGGTGTCATTGTCGAATGGTCTATTTGCCAATGTGCTACATCTEST: gi|211461649|gb|FL410738.1|FL410738
genomic: GGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAGgttctgcgtt ... tgtcttacagGGAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCAATGTGCTACATCT
EST: GGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAG GGAGGATGTGGTGTCATTGTCGAATGGCCTATTTGCCAATGEST: gi|211374955|gb|FL429397.1|FL429397
genomic: GGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAGgttctgcgtt ... tgtcttacagGGAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCAATG
EST: GGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAG GGTAGGATGTGGTGTCATTGEST: gi|31356628|gb|CD440985.1|CD440985
genomic: GGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAGgttctgcgtt ... tgtcttacagGG-AGGATGTGGTGTCATTG
EST: CTGCCATATCTCCTGCCATTTCACCCAG GGAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCTTTGTGCTACATCT
genomic: CTGCCATATCTCCTGCCATTTCACCCAGgttctgcgtt ... tgtcttacagGGAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCAATGTGCTACATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTGGTGTATTTGAATGGTCTGGTAACAACCCGGTACCACCAGAAGTATGGCTACTGCCATATCTCCTGCCATTTCACCCAGgttctgcgttcttttcatcagtgtacataaatctagtatgttataggtgtatatatacattctaccagtcaatggtaaagatctttaagttggtcctaaa
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