Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatgatatgaatgtgatgcattgtgctatttcagatctacacttttggccagtgcacaaaatatttatgaatgctgcttcgttctgcag

Basic information

species Zea mays
transcript GRMZM2G064988_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064988_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g02960.3 (Oryza sativa), 5'ss of exon 6
GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatgatatgaatgtgatgcattgtgctatttcagatctacacttttggccagtgcacaaaatatttatgaatgctgcttcgttctgcag
|||||||| |||||| |||| || |||||||| || || ||||| ||||||||||||||||| ||||||||||||  | | | |       | || ||| || |||| || || ||  ||| ||        |  || |  ||||   ||||   |  ||   |||
GTGGGTTCAACCTTCTCTTATGGCCATGGAAGGGGAGATGATGCTAAAACTCTTGCAGAGCTAGGATTCCAGgtatttgtcaga-------gctgtattatgttattaca-atgtattcttctgaggcaaaaatcaattgattatt--tgctatgttctttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22819373|gb|BU499463.1|BU499463
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|213167610|gb|FM181059.1|FM181059
EST:     GAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|74243421|gb|DT651335.1|DT651335
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|74243422|gb|DT651336.1|DT651336
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|9028651|gb|BE238691.1|BE238691
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|211327564|gb|FL371063.1|FL371063
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGAT-ACTTGAAGCGTTGCAATCATGTAGAC
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGA-GCGTTGCAATCATGTAGAC
EST: gi|78544086|gb|DV621584.1|DV621584
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|26557837|gb|CA830072.1|CA830072
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|5608284|gb|AI901951.1|AI901951
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|211291291|gb|FL447804.1|FL447804
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|76284202|gb|DV023770.1|DV023770
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCCCCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|6012215|gb|AW061757.1|AW061757
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|60348995|gb|DN215968.1|DN215968
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|4624196|gb|AI615029.1|AI615029
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|8665349|gb|BE186165.1|BE186165
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|113701690|gb|EE679194.1|EE679194
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|8665640|gb|BE186456.1|BE186456
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|37394446|gb|CF634497.1|CF634497
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|33096101|gb|CF056095.1|CF056095
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|33095939|gb|CF055933.1|CF055933
EST:     CTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: CTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|211199113|gb|FL383377.1|FL383377
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTARACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|8665340|gb|BE186156.1|BE186156
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|4885900|gb|AI677020.1|AI677020
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|60399890|gb|DN232700.1|DN232700
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|9028622|gb|BE238662.1|BE238662
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|22552497|gb|BU102336.1|BU102336
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|31558542|gb|CD527754.1|CD527754
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGAC
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGAC
EST: gi|15499296|gb|BI595809.1|BI595809
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGAC
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGAC
EST: gi|21843145|gb|BQ703726.1|BQ703726
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|20802464|gb|BQ293514.1|BQ293514
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|60291853|gb|DN190092.1|DN190092
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|86470083|gb|DY236453.1|DY236453
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|37396964|gb|CF635776.1|CF635776
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCA-TCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|37401045|gb|CF637885.1|CF637885
EST:     GAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|60347753|gb|DN214726.1|DN214726
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|50322625|gb|CO517751.1|CO517751
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|31664335|gb|CD573060.1|CD573060
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|60343137|gb|DN210110.1|DN210110
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|26456052|gb|CA827635.1|CA827635
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGGTGCCTGCACCGGA
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGG-TGCCCGCACCGGA
EST: gi|211136465|gb|FL473223.1|FL473223
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|101396763|gb|EB820307.1|EB820307
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|33097210|gb|CF057170.1|CF057170
EST:     CTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: CTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|18178204|gb|BM379414.1|BM379414
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|101396473|gb|EB820163.1|EB820163
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCCCCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|87157278|gb|DY402067.1|DY402067
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|30087735|gb|CB885941.1|CB885941
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|211426706|gb|FL073219.1|FL073219
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACSG-AT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|101396475|gb|EB820164.1|EB820164
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT
EST: gi|15427138|gb|BI542960.1|BI542960
EST:     GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG                         ATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCTGCACCGGAT
genomic: GTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 33 (upstream exon), 49 (downstream exon)
Score: 408

GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGATGTAATTGCTGTGATGTCAAAAGGGCTCTGGTTGCAACAGTAAGGCATGA


Block sizes: 33 (upstream exon), 48 (downstream exon)
Score: 216

GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGATGTAATTGCTGTGATGTCAAAAGGGCTCTGGTTGCAACAGTAAGGCATGA


Block sizes: 33 (upstream exon), 48 (downstream exon)
Score: 184

GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGATGTAATTGCTGTGATGTCAAAAGGGCTCTGGTTGCAACAGTAAGGCATGA


Block sizes: 33 (upstream exon), 45 (downstream exon)
Score: 138

GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatga ... cgttctgcagATCGGTGATTACTTGAGCGTTGCAATCATGTAGACGGTGCCCGCACCGGATGTAATTGCTGTGATGTCAAAAGGGCTCTGGTTGCAACAGTAAGGCATGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAGgtacgtatgatatgaatgtgatgcattgtgctatttcagatctacacttttggccagtgcacaaaatatttatgaatgctgcttcgttctgcag

- - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT