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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTCAGCTTTGCTCTGATTTCAACAAAGGACCATCTACATGGTCACCTATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagctaaactttcatgctttgggggctgcataaggaaggatccatgctacgctatctgaattttggagtcatcctatgttacgcttttctaccta...

Basic information

species Zea mays
transcript GRMZM2G064212_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064212_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g58560.1 (Oryza sativa), 5'ss of exon 5
CTGCTCAGCTTTGCTCTGATTTCAACAAAGGACCATCTACATGGTCACCTATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagcta------aactttcatgctttgggggctgcataaggaaggatccatgctac-gctatctgaattttggagtcatccta-tgttacgcttttctaccta----------------
||||||||||||||| ||||||||||||||| | ||| || |||||||| ||||||||| | || |||||||||||||| |||||||||||||| |||||||||  ||| |      || | |||| |||||  |||| |||| ||           |    | | | |  | |   |  |  | ||| | |||  |  |||   | |                
CTGCTCAGCTTTGCTGTGATTTCAACAAAGGTCAATCAACTTGGTCACCGATTCTTTTGCTGGTCCCTCTGGTTCTTGGTCTTGACAAAATTAATCCAAGgtaagcagcaagctattaaatctcattctttgtaggcttcatatggtcacccttgaacggttgatgtttctactgatggttgtttctagtattaatcacttcctgccattgcccttactatcag

upper sequence: GRMZM2G064212_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g27350.2 (Oryza sativa), 5'ss of exon 5
CTGCTCAGCTTTGCTCTGATTTCAACAAAGGACCATCTACATGGTCACCTATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagc-------taaactttcatgctttgggggctgcataaggaaggatccatgctacgctatctgaattttggagtcatcctatgttacgcttttctaccta-
||||||||||||||| |||||||||||||   | ||| || ||||| || ||||||||||| || |||||||||||||| ||||||||| |||| |||||||||| | |       |||| |  |||||||||  | ||   |  ||||    |  || |  | |||||||  | | ||||  ||| | |||    |||||||| |  
CTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGgtaatcaccaagctattaaaataccatgctttgtagacttt-tgtggaa----cagtgtttggttatctga--tatagagttgtccaa-gttggttttttctacatgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76289472|gb|DV029040.1|DV029040
EST:     ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG                         GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: gi|71320080|gb|DR796795.1|DR796795
EST:     ATTCTTTTGTTAGTTCCTCGGGTTCTTGGCCTTGACAAAATTAACCCAAG                         GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: gi|89764485|gb|DY691273.1|DY691273
EST:     TGACAAAATTAACCCAAG                         GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
genomic: TGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: gi|71304474|gb|DR788354.1|DR788354
EST:     ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG                         GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: gi|88752742|gb|DY536883.1|DY536883
EST:     ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG                         GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: gi|60356331|gb|DN223304.1|DN223304
EST:     TTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG                         GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
genomic: TTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT