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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatatcttgttcttttatatttaattcacctacccaagatttaccttgtgctatgcttgttcttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccag

Basic information

species Zea mays
transcript GRMZM2G063792_T07
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 7
TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatatcttgttcttttatatttaattcacctacccaagatttaccttgtgctatgcttgttcttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccag
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||  |||||||| ||    || || ||||    |   |||     ||  | |  ||   |  ||    ||  |  |   |     |   |   |||  | || |||||  |      | ||| ||
TTATGCATGAATTGCGCCTCATTCACACTGATTTAAAGCCTGAGAACATTCTTCTTGTTTCTCCAGAGTACATTAAAGTGCCCGATTACAAAgtatactttgttcttctac--ctatttgacct-tttagcctttttaacgtcttctttttacccggtttagctgattatgattcaacaattttatgttatctttctaatccttctacaatctctgctag

upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatatct--tgttcttttatatttaattcacctacccaagatttaccttgtgctatgcttgtt-cttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccag
|||||||||| || ||||||||||| || ||||| ||||||||||| || || || || ||||| || ||  ||||||| || || ||||| |||   |   ||||   ||    |  ||| |    |  | | |||  ||| |  ||| |||  | | | ||   ||   | ||    |    | | |  | | | | |                       
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatatggttttgctt-tattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag------------------

upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 7
TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatatcttgttcttttata-------tttaattcacctac-------------------ccaagatttaccttgtgctatgc---ttgttcttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccag
| |||||||| |||| |||||| |||||||| || |||||||||||||| ||  |||||||||| || ||  | |||||  | || ||||| ||||||||  |||| || |        || ||||    | |                    |||||  |   |  || ||| |    | ||| |||    |||     |  |         |  || ||||  | ||  |  ||| | |||   |||
TCATGCATGATTTGCACCTCATCCACACTGACTTGAAGCCTGAGAACATACTTTTTGTTTCTCCAGAATATGTAAAAGTATCAGACTACAAGgtatatctacttctgttctggtagcttttcaatttgtttgcacttctgttgttctttcaatcaagaccttattgttgatattcaggcttttccttttccctgttccctttccatatcagttattatctggtcataatgtttctttctaatt--gcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33104273|gb|CF064233.1|CF064233
EST:     GTACATTAAAGTGCCTGATTACAAA                         GTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAG
genomic: GTACATTAAAGTGCCTGATTACAAAgtatatcttg ... catttgccagGTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAG
EST: gi|213175408|gb|FM189251.1|FM189251
EST:     AGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAA                         GTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAG
genomic: AGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatatcttg ... catttgccagGTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAG