1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATGTGCATGAGCCTGATACTACTGAGGCTGCTCCTGCAGCTGAAAATGGAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatatattcttcacaaattttggaaaatcctattttgtttgcagcatgctgatggatttgatgattgttgcgaccttccataatggggtttttctg...
species | Zea mays |
transcript | GRMZM2G063676_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAG GTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCGEST: gi|32931548|gb|CF036360.1|CF036360
genomic: GAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCG
EST: GAGCACAAAATCCTGAGGAAAAATCTGTTCCAATGGGAACTGATGCAAAG GTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGAGEST: gi|71307557|gb|DR789997.1|DR789997
genomic: GAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCG
EST: GAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAG GTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCGEST: gi|211288522|gb|FL186988.1|FL186988
genomic: GAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCG
EST: ACACAAAATCCCGAAGGAAAAATCTGTTCCAATGGGAAACTGATGCAAAG GTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCGEST: gi|32856246|gb|CD995927.1|CD995927
genomic: ACACAAAATCCCG-AGGAAAAATCTGTTCCAAT-GGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCG
EST: GAGCACAAAATCCTGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAG GTTGAGCCATCAAAAAGGAAAGGTAAGAGAACTTCTGTGTCCGGTCCATGAEST: gi|32933060|gb|CF037872.1|CF037872
genomic: GAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGT-TCCGGTCCATGC
EST: GAGCACAAAATCCTGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAG GTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGAG
genomic: GAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCAAAAAGGAAAGTTAAGAGAACTTCTGTTCCGGTCCATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTGCATGAGCCTGATACTACTGAGGCTGCTCCTGCAGCTGAAAATGGAACACAAAATCCCGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatatattcttcacaaattttggaaaatcctattttgtttgcagcatgctgatggatttgatgattgttgcgaccttccataatggggtttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG