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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGTGTTGGTGTTGCAACTGTCACTGATCTGCAACTCAATGCTGTGGGATCCATACTCTCCTTGCTGGCAATTATCACGACTTGCATTGCTCAAATTgtatcctttcagcagcagctcatatttattttccacaaaatgaagtttcagtacctaataatgttgtctttctttagtatgatttacacatattttagac...

Basic information

species Zea mays
transcript GRMZM2G063511_T02
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063511_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g07670.1 (Oryza sativa), 5'ss of exon 5
TCTTGGTGTTGGTGTTGCAACTGTCACTGATCTGCAACTCAATGCTGTGGGATCCATACTCTCCTTGCTGGCAATTATCACGACTTGCATTGCTCAAATTgtatcctttcagcagcagctcatatttat---tttccacaaaatgaagtttcagtacctaataatgttgtctttctttagtatgatttacacatattttagac
  ||||||| ||||||||||| || |||||||||||||||||||||||||||||| || | ||||||||||||||||| || || ||||| || |||||||||||||| || |  |||| | |||||     || ||| |||||||| ||| | | | |||| |   |||  |     ||||  |||| || | |   |    
CTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTgtatcctt-caacttcagcccttattttcctcttcccaaaaaatgaaatttta-tgcataatcaccctgtagtgagaaagtagaattttcatacacggtcag-

upper sequence: GRMZM2G063511_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 5
TCTTGGTGTTGGTGTTGCAACTGTCACTGATCTGCAACTCAATGCTGTGGGATCCATACTCTCCTTGCTGGCAATTATCACGACTTGCATTGCTCAAATTgtatcctttcagcagcagctcatatttatt--ttccacaa------aatgaagtttcagtacctaataatgttgtctttctttagtatgatttacacatattttagac
||| ||||||||  ||||||| || ||||||||||||||||||||| |||| ||  |  | || ||||| ||  | || || || ||  ||||||| |||||||||||| || |      ||  ||| ||  || | |||      ||||||  |  || | | |||||     |||  || |  | |   ||| |   |||      
TCTGGGTGTTGGAATTGCAACCGTTACTGATCTGCAACTCAATGCTTTGGGCTCTTTCTTATCTTTGCTCGCGGTGATTACAACATGTGTTGCTCAGATTgtatcctttaagaaa-gttccaattttgttagttgctcaagtttttaatgaaacta-agaatcaaataaaaaaatcta-ctatgctttagcttatatgcattc-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931475|gb|CF036287.1|CF036287
EST:     ACTCTCCTTGCTGGCAATTATCACGACTTGCATTGCTCAAATT                         ATGACAAACACTATCCAGAAGAAGTTCAAGGTCTCATCGACCCAACTGCTC
genomic: ACTCTCCTTGCTGGCAATTATCACGACTTGCATTGCTCAAATTgtatcctttc ... cgttcatcagATGACAAACACTATCCAGAAGAAGTTCAAGGTCTCATCGACCCAACTGCTC
EST: gi|32932218|gb|CF037030.1|CF037030
EST:     CGACTTGCATTGCTCAAATT                         ATGACAAACACTATCCAGAAGAAGTTCAAGGTCTCATCGACCCAACTGCTC
genomic: CGACTTGCATTGCTCAAATTgtatcctttc ... cgttcatcagATGACAAACACTATCCAGAAGAAGTTCAAGGTCTCATCGACCCAACTGCTC