1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTGCTATGGGGTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatatatacttgacccttttcattctctgataatctgattagaccatggatgccattgtcaatttgctaaaacttgtttttttacccatgtttgcag
species | Zea mays |
transcript | GRMZM2G063492_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTG CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGEST: gi|71320091|gb|DR796800.1|DR796800
genomic: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatata ... atgtttgcagCAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAG
EST: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTG CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGEST: gi|78078433|gb|DV506847.1|DV506847
genomic: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatata ... atgtttgcagCAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAG
EST: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTG CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGEST: gi|71327380|gb|DR800303.1|DR800303
genomic: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatata ... atgtttgcagCAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAG
EST: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTG CAATTGGTGGCTATTTTCTCGGCAACAGATTCCTGTTTGCACCTTEST: gi|67026824|gb|CO455573.1|CO455573
genomic: -TTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatata ... atgtttgcagCAATTGGTG-CTATTTTCTCGGCAACAGATTC-TGTTTGCACCTT
EST: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTG CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGEST: gi|91872698|gb|EB402655.1|EB402655
genomic: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatata ... atgtttgcagCAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAG
EST: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTG CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAGEST: gi|78118702|gb|DV537086.1|DV537086
genomic: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatata ... atgtttgcagCAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAG
EST: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTG CAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAG
genomic: GTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatata ... atgtttgcagCAATTGGTGCTATTTTCTCGGCAACAGATTCTGTTTGCACCTTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTATGGGGTTGTTCAAGAAACTTGATGTTGGTCCACTCGAGCTTGGGGACTATCTTGgttggatatatacttgacccttttcattctctgataatctgattagaccatggatgccattgtcaatttgctaaaacttgtttttttacccatgtttgcag
- - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - GAGCTT