1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGGCAAGGATGAAGAGGAGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATATTTGgtagggaagatcaaaattctctatcttaaactgggctaaacgaagctgccaaagttactgattccagctttgcctttctgttctaattgcag
species | Zea mays |
transcript | GRMZM2G063355_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGATATACCTGACATGGATACTTATGAAGACACAGGGGATAATTTG GCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAAEST: gi|211327148|gb|FL012767.1|FL012767
genomic: AGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATA-TTTGgtagggaaga ... ctaattgcagGCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
EST: GGAAGATATACCTGACATGGATACTTATGAAGACACAGGGGGATAATTTG GCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACCAEST: gi|211327149|gb|FL012768.1|FL012768
genomic: GGAAGATATACCTGACATGGATACTTATGAAGACACAAGGG-ATA-TTTGgtagggaaga ... ctaattgcagGCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
EST: AGGAAGATATACCTGACATGGATACTTATGAAGACACAGGGGATAATTTG GCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACNAEST: gi|148971664|gb|EE022387.2|EE022387
genomic: AGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATA-TTTGgtagggaaga ... ctaattgcagGCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
EST: AGGAAGATATACCTGACATGGATACTTATGAAGACACAGGGGATAATTTG GCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAAEST: gi|26559206|gb|CA831441.1|CA831441
genomic: AGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATA-TTTGgtagggaaga ... ctaattgcagGCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
EST: AGGAAGATATACCTGACATGGATACTTATGAAGACACAGGGGATAATTTG GCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAAEST: gi|50331765|gb|CO526891.1|CO526891
genomic: AGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATA-TTTGgtagggaaga ... ctaattgcagGCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
EST: AGGAAGATATACCTGACATGGATACTTATGAAGACACAGGGGATAATTTG GCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAAEST: gi|22542051|gb|BU092489.1|BU092489
genomic: AGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATA-TTTGgtagggaaga ... ctaattgcagGCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
EST: AGGAAGATATACCTGACATGGATACTTATGAAGACACAGGGGATAATTTG GCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
genomic: AGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATA-TTTGgtagggaaga ... ctaattgcagGCTGCTGCTGAACCATCATACTTTATCGCAGAAGAACCAGAAGATGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGGCAAGGATGAAGAGGAGGAAGATATACCTGACATGGATACTTATGAAGACACAAGGGATATTTGgtagggaagatcaaaattctctatcttaaactgggctaaacgaagctgccaaagttactgattccagctttgcctttctgttctaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA