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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcactagttactaatgagaccttaatctcactagttactaacgagtctcattttctgtattccaggcagtactctgtttcagatttttaggtac...

Basic information

species Zea mays
transcript GRMZM2G062761_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 5
GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcactagttactaa-tgagaccttaatctcactagttactaacgagtc-tcattt-tctgtattccaggcagtactctgtttcagatttttaggtac
||| ||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| ||  |  | |||||||  ||| |  || | |  |    |||| |    | |      ||  || || ||| |  ||||| |      || | || | |     ||| || |  ||
GCTTACAGGAAAGCCACTCTTTCCAGGGAAAAATGTTGTGCATCAATTGGATCTCATGACTGATCTACTTGGCACTCCTTCAGCAGAATCCCTTGCTAAGgtatattcaatccttgcaagcttgtgccttcactcaagtgcaatgtattgactcctcactagtctgtgtgtt---cacttctttatgcagaattcttcgcaac

upper sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 5
GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcactagttactaatgagac-cttaatctcactagttactaacgagtctcattttctgtattccaggcagtactctgtttcagatttttaggtac
|||||| ||||||||| | ||||| ||||| ||||||||||| || |||||||| ||||||||| | ||||| |||||| |  | ||||| |   | | |||  |   |  |    |||||  ||   ||  |   |  | || |  | |  | | |  |  | || |    | | | ||   ||||  || ||    |  
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGCACACCTCCTCCTGAGTCCACTGCAAGGgtcagtatatcaaaatctaatttgaagttttctgaaatcaattgcgcaggcttgtgacatggtttaattggagtaattctaaatttccaatgttcctttt-

upper sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcactagttactaatgagac-cttaatctcactagttactaacgagtctcattttctgtattccaggcagtactctgtttcagatttttaggtac
|||||| ||||||||| | ||||| ||||| ||||||||||| || |||||||| ||||||||| | ||||| || ||| |  | ||||| ||  | | |||  |   |  |    |||||  ||   ||  |   |  | ||    | |  | | |  |  | || |    | | | ||   ||||  || ||    |  
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt-

upper sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G18040.2 (Arabidopsis thaliana), 5'ss of exon 4
GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcact-agttactaatgagaccttaatctcactagttactaacgagtctcattttctgt-attccaggcagtactctgtttcagatttttaggtac-----
|||||| ||||||||| | ||||| ||||||||||| ||||| || |||||| ||||||||||| | |||||||| ||| |  | ||  ||||  | | |||  | |     |||||   ||      ||    |  |||   |||  |  |    | ||||||| ||  |              || | | |||||   ||     
GCTCACTGGGAAGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTGGTACTCCTCCTCCCGAAGCTATTGCAAGGgttagttggtagagttatctat------ttctgtttgctaaa-acttgcatgctagaatttctgtgatgtcttatgacttatgaattaaaagttttataaaccatga

upper sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 5
GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcactagttactaatgagaccttaatctcactagttactaacgagtctcattttctgtattccaggcagtactctgtttcagattt-ttaggtac-----
||| ||||| || || || ||||| ||||| ||||| ||||| ||||||||||| ||||||||| | ||||| || ||||| || || || ||| | | |||  | |  ||  || |||||      ||  |||    | | | | || || || ||| |   | ||||| |  | || || | | |  ||  |||| |       
GCTTACAGGAAAACCGCTGTTTCCGGGGAAAAATGTAGTGCACCAGTTGGATCTCATGACTGATTTGCTTGGCACTCCTTCTGCTGAATCAATCGCAAGGgttagttatctcatt-ctaattctgttttt-tctggtcactaattgac-agactgattgt--atgttccaagtgg-acactctctgaatttggttagctttctttt

upper sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S87_157V6.2 (Physcomitrella patens), 5'ss of exon 5
GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcactagttactaatgag--accttaatctcactagttactaacga--gtctcattttctgtattccaggcagtactctgtttcagatttttaggtac
| | || || |||||||| || || |||||||||||||| |||||| ||||||||||||| ||  | ||||| |  || ||  ||||  |  |    | |||| |  |||        |||     | |||  |    ||   | | |  ||  |  || | |   |  ||  | || | | |   || | |||| |       
GTTGACCGGAAAGCCACTTTTCCCTGGGAAGAATGTTGTTCATCAGCTGGATCTTATGACAGACATGCTTGGAAGTCCATCTTCAGAAACCGTTCAAAGGgtaagagcacagtcctgaaatactttaacttggtgaggctcaatgcaagtgaaagaatcctatggagagttttaagcggca-taaattcctgattctgtct---