1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TATATCTGTTGACCTCAACACGATGGCAGCCGCCTTTAAGACTTCGGTCTCCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctcataagtcgctcctcctgaaatttctgtgcattttgtgcgctgcttctaactgaaacctctgcag
species | Zea mays |
transcript | GRMZM2G062210_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAGEST: gi|211125416|gb|FL031454.1|FL031454
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAGEST: gi|22819870|gb|BU499960.1|BU499960
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAGEST: gi|211097205|gb|FL379410.1|FL379410
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAGEST: gi|60345822|gb|DN212795.1|DN212795
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAGEST: gi|60357208|gb|DN224181.1|DN224181
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAGEST: gi|20811311|gb|BQ295789.1|BQ295789
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAGEST: gi|211125417|gb|FL031455.1|FL031455
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
EST: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAG GCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
genomic: CCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctca ... acctctgcagGCCCGGATAGACTCCCACAACAAGATCCTTTACGCAAGGCATGCTGACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATCTGTTGACCTCAACACGATGGCAGCCGCCTTTAAGACTTCGGTCTCCATGCTGCAGAAGGAGCTGGCCGCACTGATTACTGAGGACAAAATACAGgtaaatctcataagtcgctcctcctgaaatttctgtgcattttgtgcgctgcttctaactgaaacctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT