Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGAAGATGATGATGACGACGACACTGAAGCTCTAATGGCAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatcattgcatctgtctgtgtcatgattttatgtttttgtatatctggaattttggattatggggggcataatgagaattgttccgtttcag

Basic information

species Zea mays
transcript GRMZM2G062076_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062076_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 5'ss of exon 5
---CGATGAAGATGATGATGACGACGACACTGAAGCTCTAATGGCAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc--attgcatctgtctgtgtcatgattttatgtttttgtatatctggaattttggattatggggggcataatgagaat----tgttc--cgtttcag
    || || ||||| || || || ||||||||||||||||||||||||||||| || || |||||||||||||| || || || |||||||||||||||| |   |||   ||     |||||| |    ||| ||| | ||  | |     ||| | ||          |||  | |||    || ||   | |||||
TGATGAGGATGATGACGACGATGATGACACTGAAGCTCTAATGGCAGAGCTTGAAAGAATCAAGAAAGAAAGAGCTGAAGAAAACCTTAGAAAGgtttgttgttttattctctccactagtgtcaaggcaatatatttctttaggttttactcttttgtttggtaaaacagtaagaataatattatgctcgttgcttcag

upper sequence: GRMZM2G062076_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G13200.1 (Arabidopsis thaliana), 5'ss of exon 5
---------CGATGAAGATGATGATGACGACGACACTGAAGCTCTAATGGCAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgt----ttgttatcattgcatctgtctgtgtcatgatt----ttatgtttttgtatatctggaattttggattatggggggcataatgagaattgttcc-gtttcag----------------------------------
            ||| ||||||||||| ||||||||||||||||| ||||| || || ||   ||| |||||||||||||  || |||| ||| || |||||    ||| |||  |      ||| | ||    ||||    |||    |   ||     ||  ||||  |  ||   |  |||||  |  |||  ||  ||  | |                                  
TGATGACGAAAGTGACGATGATGATGAGGACGACACTGAAGCTCTTATGGCGGAACTCGACCAGATAAAGAAAGAAAGAGTGGAAGAGAGGCTCAGGAAGgtaatattgctattgtctgggatgtttctgctcagattgctattagaaatgactaggataggttttttaaaacatattga-cataacaaagatttctcttgtgactgtactaatgtttggtaacatatatgtatcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211094640|gb|FL030912.1|FL030912
EST:     CGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|113630224|gb|DW788071.1|DW788071
EST:     AGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: AGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|9824885|gb|BE574982.1|BE574982
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60357821|gb|DN224794.1|DN224794
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|14245489|gb|BG874071.1|BG874071
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60348926|gb|DN215899.1|DN215899
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|22542576|gb|BU093014.1|BU093014
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTATAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTG
EST: gi|9731495|gb|BE510247.1|BE510247
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211094642|gb|FL030914.1|FL030914
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAAAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|19822011|gb|BQ048035.1|BQ048035
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|149074288|gb|EE162665.2|EE162665
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|14203855|gb|BG837532.1|BG837532
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|4646735|gb|AI621810.1|AI621810
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|28987594|gb|CB351712.1|CB351712
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|27522103|gb|CA989209.1|CA989209
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|19770098|gb|BQ034819.1|BQ034819
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|22546523|gb|BU098834.1|BU098834
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60357589|gb|DN224562.1|DN224562
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211094641|gb|FL030913.1|FL030913
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAAGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|71318075|gb|DR795799.1|DR795799
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211094644|gb|FL030916.1|FL030916
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|4938781|gb|AI691189.1|AI691189
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60341620|gb|DN208593.1|DN208593
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|94479969|gb|EB708927.1|EB708927
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60357962|gb|DN224935.1|DN224935
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|44901479|gb|CK828024.1|CK828024
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|37391486|gb|CF632986.1|CF632986
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|37397360|gb|CF635977.1|CF635977
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|67015842|gb|CO444591.1|CO444591
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211079019|gb|FL148958.1|FL148958
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAAGAGGCCAAGATGAAGG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGG
EST: gi|29130980|gb|CB381684.1|CB381684
EST:     GAAAGAAAGAGCCGAGGAGAAGCTTTGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCCAGATGAAGGAGGCTGAACTGATG
genomic: GAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|19769787|gb|BQ034508.1|BQ034508
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|40334927|gb|CK368997.1|CK368997
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|71318073|gb|DR795798.1|DR795798
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|28910213|gb|CB331325.1|CB331325
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|109637584|gb|EC591129.1|EC591129
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGACTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60395043|gb|DN227912.1|DN227912
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60346299|gb|DN213272.1|DN213272
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60397411|gb|DN230227.1|DN230227
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60352503|gb|DN219476.1|DN219476
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211444750|gb|FL452517.1|FL452517
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|18178582|gb|BM379792.1|BM379792
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|19822434|gb|BQ048458.1|BQ048458
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|166456104|gb|EG167072.1|EG167072
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGNGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAAC
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAAC
EST: gi|37393026|gb|CF633769.1|CF633769
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|19769895|gb|BQ034616.1|BQ034616
EST:     TTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: TTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60338997|gb|DN205970.1|DN205970
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|22520729|gb|BU079540.1|BU079540
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|9794824|gb|BE553132.1|BE553132
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|21891526|gb|BQ744739.1|BQ744739
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|9742832|gb|BE518980.1|BE518980
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|22521454|gb|BU080265.1|BU080265
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|40334706|gb|CK368776.1|CK368776
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|17932392|gb|BM269352.1|BM269352
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211540435|gb|FL210076.1|FL210076
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGG
EST: gi|21828682|gb|BQ703366.1|BQ703366
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60344935|gb|DN211908.1|DN211908
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211094643|gb|FL030915.1|FL030915
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|37378126|gb|CF625725.1|CF625725
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|18177522|gb|BM378732.1|BM378732
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|148965262|gb|EC906100.2|EC906100
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|40335334|gb|CK369404.1|CK369404
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|24764934|gb|CA400095.1|CA400095
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCACCAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|26457681|gb|CA829264.1|CA829264
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|5607801|gb|AI901468.1|AI901468
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|76015323|gb|DT942493.1|DT942493
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|9794685|gb|BE552993.1|BE552993
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCGAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|16920557|gb|BM074715.1|BM074715
EST:     GCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: GCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60394367|gb|DN227237.1|DN227237
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|60349874|gb|DN216847.1|DN216847
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|211453654|gb|FL478351.1|FL478351
EST:     CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatc ... tccgtttcagGAGCGGCAACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATGAAGATGATGATGACGACGACACTGAAGCTCTAATGGCAGAGCTTGAGAGGATTAAGAAAGAAAGAGCCGAGGAGAAGCTTAGAAAGgtttgttatcattgcatctgtctgtgtcatgattttatgtttttgtatatctggaattttggattatggggggcataatgagaattgttccgtttcag

- - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC