Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTATCGTTTCTTTCTGAACAAGGAATATGGGAGTCTCTTCTCATCTTTAACCACTGGACTGTATCTGACTTTCAAGTTGACTTCGGTAGTTGAAAAGgtaccactgtttgctgcactccgtatgtaaatcattcacttgaaagcatactttgaaggacaggcctgacctggcacagtggtgagaagcctttccactg...

Basic information

species Zea mays
transcript GRMZM2G061980_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061980_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g25180.1 (Oryza sativa), 5'ss of exon 5
TTGGTATCGTTTCTTTCTGAACAAGGAATATGGGAGTCTCTTCTCATCTTTAACCACTGGACTGTATCTGACTTTCAAGTTGACTTCGGTAGTTGAAAAGgtaccactgtttgctgcactccgtatgtaaatcattcacttgaaagcata---ctttgaaggacaggcctgacctggcacagtggtgagaagcctttccactg-----------------
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| ||| ||| ||     | |||  | |   |   | ||       |    || | ||  | |    |   |     ||    ||   |   ||  || ||                 
TTGGTACCGTTTCTTTCTGAACAAGGAATATGGGAGTCTTTTCTCATCTTTAACCACTGGACTGTACCTGACCTTCAAGTTAACTTCAGTAGTTGAAAAGgtactact-tttactagttactgtagctcacatacaaaattagtgctgtgaacctataaaatatatattttttccattccatgcatgctta-ttttctcattgttgactgtatgttccag

upper sequence: GRMZM2G061980_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA18G45010.1 (Glycine max), 5'ss of exon 5
TTGGTATCGTTTCTTTCTGAACAAGGAATATGGGAGTCTCTTCTCATCTTTAACCACTGGACTGTATCTGACTTTCAAGTTGACTTCGGTAGTTGAAAAGgtaccactgtttgctgcactccgtatgtaaatcattc-acttgaaagcatactttgaaggacaggcctgac---ctggcacagtggtgagaagcctttccactg
||||||||||||||| |||||||| |||||||| || ||||| |||||  | |  || ||| ||||||| || || ||  | || || || |||||||||||      ||||     | | | | |  | |  |||  | || || | |   | |||     |  |   ||    |  | |      |   |    |       
TTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGgtgtgttggtttttaaaaatacatgtagatactattttattttaatgtagcttgtgatcagtaacctccacaatttctctctcccccgttgaattatata----