1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttctgattttccttctatcttagatatttaactaatcttgtaataaacataattgttgcttgatgatgtattgatatttcctattaaaaatagctgttgaaagttgctaatcacattcacgtatatcttttcttttatgttcacttgaacag
species | Zea mays |
transcript | GRMZM2G061620_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAEST: gi|211500822|gb|FL228131.1|FL228131
genomic: CACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTG-TTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCA
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|76280698|gb|DV020266.1|DV020266
genomic: -C-C-GGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|101401583|gb|EB822467.1|EB822467
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|76012358|gb|DT939528.1|DT939528
genomic: -C-C-GGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttctgattttccttctatcttagatatttaactaatcttgtaataaacataattgttgcttgatgatgtattgatatttcctattaaaaatagctgttgaaagttgctaatcacattcacgtatatcttttcttttatgttcacttgaacag
- - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - GCTGTT