1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTACCTGTCAGTGCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttctgattttccttctatcttagatatttaactaatcttgtaataaacataattgttgcttgatgatgtattgatatttcctattaaaaatagctgttgaaagttgctaatcacattcacgtatatcttttcttttatgttcacttgaacag
species | Zea mays |
transcript | GRMZM2G061620_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCEST: gi|76012358|gb|DT939528.1|DT939528
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTC
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|5296098|gb|AI782973.1|AI782973
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|7216451|gb|AW562573.1|AW562573
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|4314922|gb|AI444722.2|AI444722
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|211500823|gb|FL228132.1|FL228132
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|211500820|gb|FL228129.1|FL228129
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCWGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGGAGGCGGATAGT-ATGGTCAGGCTACCTCAAACCTAGTEST: gi|101401583|gb|EB822467.1|EB822467
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTG-AGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGT
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|32915276|gb|CF020088.1|CF020088
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|76280698|gb|DV020266.1|DV020266
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAGEST: gi|211500822|gb|FL228131.1|FL228131
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
EST: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTC CACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
genomic: GCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttct ... acttgaacagCACTGAGGCGGATAGTTATGGTCAGGCTACCTCAAACCTAGTTGCTGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTACCTGTCAGTGCACCGGCTGCAACTGCTACAGCCTCAGCAGCTCCTGCTGTTGCTGTCTCgtaagtttctgattttccttctatcttagatatttaactaatcttgtaataaacataattgttgcttgatgatgtattgatatttcctattaaaaatagctgttgaaagttgctaatcacattcacgtatatcttttcttttatgttcacttgaacag
- - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT