1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTTGAGCATCCAGACTGGACCATGACTCAAGCTTGCGCTGATTCATACACCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctttcactcaataatgaattaatggtccatgtgggaattctatccacacagaatctgtttattcaactttctttctcgagaaaatataaccaa...
species | Zea mays |
transcript | GRMZM2G060870_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32932161|gb|CF036973.1|CF036973
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32866744|gb|CF006426.1|CF006426
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32934643|gb|CF039455.1|CF039455
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32832496|gb|CD972174.1|CD972174
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32930749|gb|CF035561.1|CF035561
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32867862|gb|CF007544.1|CF007544
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCEST: gi|45567822|gb|CK985763.1|CK985763
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCC
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|60346084|gb|DN213057.1|DN213057
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|22542222|gb|BU092660.1|BU092660
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|211296158|gb|FL473352.1|FL473352
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|17932440|gb|BM269400.1|BM269400
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|6056907|gb|AW091312.1|AW091312
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|211377984|gb|FK983375.1|FK983375
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|60401114|gb|DN233921.1|DN233921
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|5686769|gb|AI939862.1|AI939862
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|84351358|gb|DW245763.1|DW245763
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|32866745|gb|CF006427.1|CF006427
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTEST: gi|211453293|gb|FL230455.1|FL230455
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGNATAATTT-ATGGAGGTCATTAGEST: gi|87157246|gb|DY402035.1|DY402035
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAG-ATAAATTCATGGAGGTCATTAG
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|26559123|gb|CA831358.1|CA831358
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GNGGCCATGAAGCTCTCTCCTAATAGAGATAAAEST: gi|60401080|gb|DN233887.1|DN233887
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAA
EST: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|31359252|gb|CD443609.1|CD443609
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|32932571|gb|CF037383.1|CF037383
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|71770686|gb|DR968623.1|DR968623
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|32840612|gb|CD980293.1|CD980293
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|60399775|gb|DN232585.1|DN232585
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|211375011|gb|FL430792.1|FL430792
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGTEST: gi|211296159|gb|FL473353.1|FL473353
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32932100|gb|CF036912.1|CF036912
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|211365280|gb|FL463922.1|FL463922
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGTEST: gi|32867861|gb|CF007543.1|CF007543
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
EST: CCAAGACCCTCAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTTATGGAGGTCATTAGT
genomic: CCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctt ... ttgctggcagGTGGCCATGAAGCTCTCTCCTAATAGAGATAAATTCATGGAGGTCATTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGAGCATCCAGACTGGACCATGACTCAAGCTTGCGCTGATTCATACACCAAGACCTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACGgtagaatctttcactcaataatgaattaatggtccatgtgggaattctatccacacagaatctgtttattcaactttctttctcgagaaaatataaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaata