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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctataagaatttgggcatgtttggacccttagctccatctcgccttgcttcgctgggcaaactagccttgccaggaaaggtggacgctctgttt...

Basic information

species Zea mays
transcript GRMZM2G060669_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060669_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g02960.3 (Oryza sativa), 5'ss of exon 5
GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctataagaatttgggcatgtttgg--acccttagctccatctcgccttgcttcgctgggcaaactagccttgccaggaaaggtggacgctctgttt
|||||||||||||||||| ||||||| ||||| || || |||||||||||||| || || ||||| || ||| |||||||||| ||||||| | |||| |   | ||      | | |   | ||   |  |||     ||||  |  || ||||    |  | || | | | |  |  || |  |  | |  || | 
GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCGTGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAGgtgagagtttatccccattgaccattgtgactattcttctgctcatcctgtttttcttcctctgatacacaaacatgga-aaaaatgcagagcacgttggt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211273990|gb|FL433152.1|FL433152
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
EST: gi|113693290|gb|DW845531.1|DW845531
EST:     CAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
EST: gi|60394770|gb|DN227640.1|DN227640
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
EST: gi|20802865|gb|BQ293915.1|BQ293915
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
EST: gi|5608402|gb|AI901979.1|AI901979
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
EST: gi|26456474|gb|CA828057.1|CA828057
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
EST: gi|37395737|gb|CF635151.1|CF635151
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
EST: gi|44901460|gb|CK828005.1|CK828005
EST:     CTTTTGCATTTGTATACCCAGACAAGAATTGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaacgctat ... acatctgaagGTGGGTTCGACCTTCGCTTATGGCCATGGAAGAGGTGATGATGCCAAAACT