1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGGGATCGCACGGAGATGGAAAACGTTATATTCAAGCTTTTTGAAAGGCAGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAGgtatttccttgtccctttcctgaagtgtgatgcatattattatttatgtttcctctattgttctctgactgctcgtgtggttattatttatgtttctctatgcag
species | Zea mays |
transcript | GRMZM2G060284_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCCAATTGGGCCCTAAAGGCCCTCGTGCAAGAAACTGACCAGCCAGAG CAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGAEST: gi|149085565|gb|EE175077.2|EE175077
genomic: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAGgtatttcctt ... ctctatgcagCAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGT
EST: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAG CAATTTCTGAAG-AGATATTGAACGATCTGTGTGTGTATAATAAACGAGGTEST: gi|13490745|gb|BG517509.1|BG517509
genomic: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAGgtatttcctt ... ctctatgcagCAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGT
EST: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAG CAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGGEST: gi|76937460|gb|DV175147.1|DV175147
genomic: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAGgtatttcctt ... ctctatgcagCAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGT
EST: AGCCCAATTGGGTCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAG CAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGTEST: gi|78075050|gb|DV503484.1|DV503484
genomic: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAGgtatttcctt ... ctctatgcagCAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGT
EST: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAG CAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGT
genomic: AGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAGgtatttcctt ... ctctatgcagCAATTCCTGAAGGAGATATTGAACGATCTGTGTGTGTATAATAAACGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGGGATCGCACGGAGATGGAAAACGTTATATTCAAGCTTTTTGAAAGGCAGCCCAATTGGGCCCTAAAGGCACTCGTGCAAGAAACTGACCAGCCAGAGgtatttccttgtccctttcctgaagtgtgatgcatattattatttatgtttcctctattgttctctgactgctcgtgtggttattatttatgtttctctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA