1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTTCTGTGGAAAGGCTAAGTTCGATGAAGAAGTATGTCTTCGGCTTGGGATCTGCTCAGgttctgttcatgctaacgcaaccatcaaacagttatcattactcaattactccctgataaatgtgtacaattggcag
species | Zea mays |
transcript | GRMZM2G058948_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAGGCTAAGTTCGATGAAGAAGTATGTCTTCGGCTTGGGATCTGCTCAG GTGCTAGCTACTACTGCAGCTGTTGGTGTGATAGCTCATCGTTTTGCTGTGEST: gi|32824390|gb|CD964112.1|CD964112
genomic: AAAGGCTAAGTTCGATGAAGAAGTATGTCTTCGGCTTGGGATCTGCTCAGgttctgttca ... caattggcagGTGCTAGCTACTACTGCAGCTGTTGGTGTGATAGCTCATCGTTTTGCTGTG
EST: GATCTGCTCAG GTGCTAGCTACTACTGCAGCTGTTGGTGTGATAGCTCATCGTTTTGCTGTGEST: gi|74240304|gb|DT648218.1|DT648218
genomic: GATCTGCTCAGgttctgttca ... caattggcagGTGCTAGCTACTACTGCAGCTGTTGGTGTGATAGCTCATCGTTTTGCTGTG
EST: AAAGGCTAAGTTCGATGAAGAAGTATGTCTTCGGCTTGGGATCTGCTCAG GTGCTAGCTACTACTGCAGCTGTTGGTGTGATAGCTCATCGTTTTGCTGTG
genomic: AAAGGCTAAGTTCGATGAAGAAGTATGTCTTCGGCTTGGGATCTGCTCAGgttctgttca ... caattggcagGTGCTAGCTACTACTGCAGCTGTTGGTGTGATAGCTCATCGTTTTGCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTCTGTGGAAAGGCTAAGTTCGATGAAGAAGTATGTCTTCGGCTTGGGATCTGCTCAGgttctgttcatgctaacgcaaccatcaaacagttatcattactcaattactccctgataaatgtgtacaattggcag
- - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AGAAGT