1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGCGGTCTGCAAGGGGCATGCAAGGGCTTCATGTTCGGACTACAGGTCACGGAGCTGTTGGAAACCTGGCCCGAGCAGGTCACCCATGGCAGGAGATGGgtgagcgggcatgtcattccgcaacagcagcagctcgccgtttcgcaggttttgatctcatagcagtcgttctcttcttgcacatgttcattag
species | Zea mays |
transcript | GRMZM2G057963_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGGAGCTGTTGGAAACCTGGCCCGAGCAGGTCACCCATGGCAGGAGATGG GTACCCGTGGAGGAGGCGTATGGTCTCTGCCGGTACGACTGGATGCGGGAAEST: gi|74233574|gb|DT641488.1|DT641488
genomic: CGGAGCTGTTGGAAACCTGGCCCGAGCAGGTCACCCATGGCAGGAGATGGgtgagcgggc ... tgttcattagGTACCCGTGGAGGAGGCGTATGGTCTCTGCCGGTACGACTGGATGCGGGAA
EST: CGGAGGTGTTGGAAACTTGGCCCGAGCAGGTCACCCATGGCAGGAGATGG GTACCCGTGGAGGAGGCGTATGGTCTCTGCCGGTACGACTGGATGCGGGAAEST: gi|78075588|gb|DV504022.1|DV504022
genomic: CGGAGCTGTTGGAAACCTGGCCCGAGCAGGTCACCCATGGCAGGAGATGGgtgagcgggc ... tgttcattagGTACCCGTGGAGGAGGCGTATGGTCTCTGCCGGTACGACTGGATGCGGGAA
EST: CGGAGCTGTTGGAAACCTGGCCCGAGCAGGTCACCCATGGCAGGAGATGG GTACCCGTGGAGGAGGCGTATGGTCTCTGCCGGTACGACTGGATGCGGGAA
genomic: CGGAGCTGTTGGAAACCTGGCCCGAGCAGGTCACCCATGGCAGGAGATGGgtgagcgggc ... tgttcattagGTACCCGTGGAGGAGGCGTATGGTCTCTGCCGGTACGACTGGATGCGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCGGTCTGCAAGGGGCATGCAAGGGCTTCATGTTCGGACTACAGGTCACGGAGCTGTTGGAAACCTGGCCCGAGCAGGTCACCCATGGCAGGAGATGGgtgagcgggcatgtcattccgcaacagcagcagctcgccgtttcgcaggttttgatctcatagcagtcgttctcttcttgcacatgttcattag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG