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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattttaacttttgatttcacctttttttttgagatactacatgcttatttagcctagagaaagtttttttcatttattcttgtattgcaatccctaactttgtgcaccgattggcttttttttgtttgatccag

Basic information

species Zea mays
transcript GRMZM2G057158_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057158_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g03920.3 (Oryza sativa), 5'ss of exon 4
-----------------------------------------CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattttaacttttgatttcaccttttt------------ttttgagatactacatgcttatttagccta------gag---aaagttt-----ttttcatttat---tcttgtat-tgcaatccctaactttgtgcaccgattggctt-ttttttgtttgatccag
                                         |||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||| | ||||| |||      ||  | || |||| |||            |||    ||||    |  || | ||   ||      |||   ||| |       |||| |||| |   ||| |  | | | |   || | |   | |     ||   || ||| || ||||| ||||
TGGAAATCAGATGGCTTATGATGATTTTTTTGTGTGTATAGCAATTAATCTCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattccccagttcaacttaacctgtttaagctcatcatgtttatgtataccttttctttttctaagttaattgttgagtgtaaaatcaagagatttttatttgtaagtctcgcctatactactgcttattgaatccttttctttctttctttcttttttgaaccag

upper sequence: GRMZM2G057158_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g03920.1 (Oryza sativa), 5'ss of exon 5
CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattttaacttttgatttcaccttttt------------ttttgagatactacatgcttatttagccta------gag---aaagttt-----ttttcatttat---tcttgtat-tgcaatccctaactttgtgcaccgattggctt-ttttttgtttgatccag
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||| | ||||| |||      ||  | || |||| |||            |||    ||||    |  || | ||   ||      |||   ||| |       |||| |||| |   ||| |  | | | |   || | |   | |     ||   || ||| || ||||| ||||
CAATTAATCTCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCCgtgagtattccccagttcaacttaacctgtttaagctcatcatgtttatgtataccttttctttttctaagttaattgttgagtgtaaaatcaagagatttttatttgtaagtctcgcctatactactgcttattgaatccttttctttctttctttcttttttgaaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558010|gb|CA830245.1|CA830245
EST:     TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG
EST: gi|21828621|gb|BQ703305.1|BQ703305
EST:     TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG
EST: gi|67027074|gb|CO455823.1|CO455823
EST:     TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG
EST: gi|87156460|gb|DY401249.1|DY401249
EST:     TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG
EST: gi|113704257|gb|EE681761.1|EE681761
EST:     TCATTCCAGCAGTCTTTGATGTCACATCTTGGCCAACAACAAACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG
EST: gi|67022731|gb|CO451480.1|CO451480
EST:     TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACANACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG
EST: gi|94473208|gb|EB702166.1|EB702166
EST:     TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG
EST: gi|60340529|gb|DN207502.1|DN207502
EST:     TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA                         GGAGCGGACACAATCAGCCTCTGGTGCAG
genomic: TCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACAgtgagcattt ... tttgatccagGGAGCGGACACAATCAGCCTCTGGTGCAG