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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcacttttttttcttaaaaagtttcttggtggaatatgattatccttctaatgcccatgctttgttctatag

Basic information

species Zea mays
transcript GRMZM2G056572_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g56450.2 (Oryza sativa), 5'ss of exon 5
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcacttttttttcttaaaaagtttcttggtggaatatgattatccttctaatgcccatgctttgttctatag
|||| ||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||||||||||||| ||||||||||||  || || ||||   || |||||    || | |   |||| ||||||  |  | ||||||    |  |||||||  |||
CTATAGCTGTTTCAAAAGATCACAAGCCTGATCAGACAGATGAGCGACAACGTATCGAAGATGCTGGAGGTTTTGTAATGTGGGCAGgt--gctaagcactacattatcttattttgtatatgaatggactatgatcgtgttcctaatgatggtattttgttccttag

upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G33690.2 (Glycine max), 5'ss of exon 6
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcacttttttt-tcttaaaaagtttcttggtggaatatgattatccttcta-atgcccatgctttgttctatag------
| |||||||||||    ||||||||||| || |||||||||||| |||   | ||||||||||| || |||||||| |||||||| |||| |   |||   |  ||  | ||    | ||  ||  | || | |  || |   |||  |||   ||  |     ||||        
CCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGAGGCGAAGGATTGAAGATGCAGGTGGTTTTGTTATGTGGGCTGgtaaggtcatcttatagttagtttttgttatttgatttatagattcttgttgtttgtctctatggaaattttaaacactatgtttacag

upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 6
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcact-------------tttttttcttaaaaagtt--tcttggtggaatatgat-tatccttctaatgcccatgctttgttctatag
| |||||||||||    |||||||| || || |||||||||||| ||||  | |||||||| || ||||| ||||| |||||||||||||     |||| |              |||  | |||   | ||  |  |      |||| || | |   |||  ||   |   |   |  || ||
CCATTGCTGTTTCTCGAGATCACAAACCAGACCAAACTGATGAGAGGCAAAGGATTGAAGAAGCAGGAGGCTTTGTTATGTGGGCAGgtaatgtcatcattaacatatagtcagctttagttttatttatttaattctaaaaagatataatgtttatctctgttgataacattacata-tacag

upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 5
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcacttttttttcttaaaaagtt--tcttggtggaatatgatta-tccttctaatgcccatgctttgttctatag-----------------------
| |||||||||||    |||||||||||||| |||||||||||| ||||  | |||||||| || ||||| ||||| |||||||| ||||     ||||||  |  ||   | | |||     || ||   || |  ||| | |    |||    ||    || |    |                        
CCATTGCTGTTTCTCGAGATCACAAGCCTGACCAAACTGATGAGAGGCAAAGGATTGAAGAAGCAGGAGGCTTTGTTATGTGGGCTGgtaatgtcatcactcatcattaacatatagtcagctttagttttatttacttaattcaaaaaatatatatataatgcttatcactattgataacatcgcatatacag

upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G12220.1 (Glycine max), 5'ss of exon 5
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcactt------ttttttcttaaaaagtttcttggtggaata----tgattatccttct--aatgcccatgctttgt-tctatag
| |||||||||||   |||||||||||| ||||||||||||||| |||   | ||||||||||| || || ||||| |||||||| |||| |   |||   |       ||||| |||     ||| ||    || |     || || ||  | |  ||   | |  |  | | | || ||
CCATTGCTGTTTCTCGGGATCACAAGCCAGATCAAACTGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGgtaaggttatcttctagttagctttttgttatttgatttattataagattcatcttgtttgtcactatggaaaatctaaacactatgtttacag

upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 6
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcacttttttttcttaaaaagtttcttggtggaatatgattatcct-tctaatgcccatgctttgttctatag-
|||||||||| ||    ||||||||||||||||||| ||| ||||| ||  | ||||| ||||| ||||| ||||| |||||||| |||| |  ||        |||   | |||  | ||||  |    | || ||||    | |  |      |  || | ||| |  
CTATTGCTGTATCCCGAGATCACAAGCCTGATCAAAGTGACGAGCGCCAAAGAATTGAGGATGCAGGAGGATTTGTCATGTGGGCTGgtaagaaaaca------tttaactgaaatttctcttcttatt-tgtgcttatataatttgcttaattggaattatactaaaag

upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT5G24940.1 (Arabidopsis thaliana), 5'ss of exon 5
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcacttttttttcttaaaaagtttcttggtggaatatgattatccttctaatgcccatgcttt----gttctatag
|  ||||||||||||  || || || ||||| |||| |||||||||  | || |||||  ||||||| ||||||||||||||||||||||  | |   ||  |          | ||||  ||   |   | ||  |    |||   ||  | |   |      ||  | ||
CATTTGCTGTTTCAAGAGACCATAAACCTGACCAAAGTGATGAGCGTGAACGGATTGAGAATGCTGGTGGTTTTGTGATGTGGGCAGgta-acaagaaaccgt----------agagttatttcccgctttgtggcttattttccggtgtgcctaactcctagattgaacag

upper sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 6
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcactttttt--ttcttaaaaagtttcttggtggaatatgattatccttctaatgcccatgctttg--ttctatag--------------------
| |||||||||||    ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |   |||| |  ||   || ||  ||   ||  |  | ||| |   ||  |  |    ||   ||   |||  |  | ||                     
CCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGCGGCAGCGTATTGAGGATGCTGGAGGGTTTGTGATGTGGGCTGgtaaggacatcaatcgttaggtttttccaagtattaatcatagaacaaagtttccagtgatttggtaattgcttgcatcttctaatgattgaaattcgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71762691|gb|DR960628.1|DR960628
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|6095655|gb|AW120322.1|AW120322
EST:     GGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: GGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|211036167|gb|FL457683.1|FL457683
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|76290021|gb|DV029589.1|DV029589
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|26558429|gb|CA830664.1|CA830664
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|76016318|gb|DT943488.1|DT943488
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|5296366|gb|AI783136.1|AI783136
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|149106821|gb|EE188718.2|EE188718
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|94472146|gb|EB701104.1|EB701104
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|67024109|gb|CO452858.1|CO452858
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCCCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|76288715|gb|DV028283.1|DV028283
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|211036166|gb|FL457682.1|FL457682
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|76016319|gb|DT943489.1|DT943489
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|60351289|gb|DN218262.1|DN218262
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|76917080|gb|DV166669.1|DV166669
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|101386844|gb|EB815439.1|EB815439
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|5901101|gb|AW042201.1|AW042201
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|74237808|gb|DT645722.1|DT645722
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|60359261|gb|DN226234.1|DN226234
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|5846990|gb|AW000069.1|AW000069
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|166414080|gb|EG170970.1|EG170970
EST:     TGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|71448387|gb|DR829437.1|DR829437
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|18660188|gb|BM500731.1|BM500731
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|61118718|gb|DN559679.1|DN559679
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|50323711|gb|CO518837.1|CO518837
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|76288714|gb|DV028282.1|DV028282
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|91051774|gb|EB162192.1|EB162192
EST:     TGATGAGCGGCAGCGTATTGAAAATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGT
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGT
EST: gi|149111016|gb|EE294515.2|EE294515
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|60340995|gb|DN207968.1|DN207968
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|60357297|gb|DN224270.1|DN224270
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|60354881|gb|DN221854.1|DN221854
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|60338245|gb|DN205218.1|DN205218
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|60394530|gb|DN227400.1|DN227400
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|22133680|gb|BQ833845.1|BQ833845
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|87156931|gb|DY401720.1|DY401720
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|67021956|gb|CO450705.1|CO450705
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCCCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|149111015|gb|EE294514.2|EE294514
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCGTTGGTGGTGTACTTGCTGTTTCGCGTGCTTTTGGTGACA
EST: gi|76931265|gb|DV172687.1|DV172687
EST:     TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG                         GAACATGGCGCG
genomic: TGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaat ... tgttctatagGAACATGGCGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAGgtatgccaatcacttttttttcttaaaaagtttcttggtggaatatgattatccttctaatgcccatgctttgttctatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG