1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTTAGAGAGGATGAAGAAGGAGAAGGGATTGTGCTCGCTGGTGCCGCTGCCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgataaaccttttttctaaattgctcatcaacctgtagttgtcagatcatgggtactacatcaaagttaacataagtaagtttgactttatgttg...
species | Zea mays |
transcript | GRMZM2G056462_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCTEST: gi|71417947|gb|DR804264.1|DR804264
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: CCCCCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCCGGATCTTTGEST: gi|211142063|gb|FL081585.1|FL081585
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAA-CCCGGATC-TTG
EST: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCTEST: gi|211142066|gb|FL081588.1|FL081588
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCAGATCTTGCTEST: gi|60349693|gb|DN216666.1|DN216666
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCTEST: gi|29577103|gb|CB617215.1|CB617215
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: TAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCTEST: gi|29947496|gb|CB816686.1|CB816686
genomic: TAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCTEST: gi|60338551|gb|DN205524.1|DN205524
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: CTTGGGAAGGAACTGACAGGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCTEST: gi|32856569|gb|CD996250.1|CD996250
genomic: CTTGGGAAGGAACTGACA-GAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: CCAGCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTEST: gi|29947331|gb|CB816599.1|CB816599
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTT
EST: AAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACANCCCGGATCTTGCTEST: gi|30031975|gb|CB833826.1|CB833826
genomic: AAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
EST: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAG CTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
genomic: CCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgata ... ttggtcacagCTGCTTGGCAGAGTATTCAACATTTTGCGTGAGAACAACCCGGATCTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTAGAGAGGATGAAGAAGGAGAAGGGATTGTGCTCGCTGGTGCCGCTGCCACCAGATACCCTTGGGAAGGAACTGACAGAGATTATAAGTATGAAGAGgtacttgataaaccttttttctaaattgctcatcaacctgtagttgtcagatcatgggtactacatcaaagttaacataagtaagtttgactttatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA