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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggctacaattatttgttcattcgttgaaatttgaaaaattcttgattttttatttcttttccaaatggttatagaagataatcatcatcttgat...

Basic information

species Zea mays
transcript GRMZM2G056393_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056393_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 5
GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggctacaattatttgt-tcattcgttgaaatttgaaaaattct-tgattttttatttcttttccaaatggttatagaag--ataatcatcatcttgat
|| |||||||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||  |  ||    ||  |  | |  ||  || || | |     || ||   |||    ||    | |   |||   | | | ||  |||    ||   |    
GCAGCTATTCGAAGAGCAACAGTAGCACGCAAGTTTATACCAGTTTACATGGGAAGTGCATTCAAAAATAAGgtttttttctgttgttcctcatattttttatttaactattgttcatcctgccattgaaaatggaatattgtaataccttttgtagtaatagaagtcggtt----

upper sequence: GRMZM2G056393_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 5
GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgt---tcgtgg-ctacaatta-tttgttcat-tcgttgaaatttgaaaaattcttgattttttatttcttttccaaatggttatagaagataatcatcatcttgat
|  ||  |||| || |||||  | || | ||| || |||||||||| |||||| ||||| ||||||||||||||     |||   |||  | | |||||  || |  ||    | || | |||    |||     | |   ||||    ||  ||| |  |   | |   |  ||   
GAAGCAGTTCGTAGGGCTACCATAGCCCAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGgtgaccagtgaattactttcaatttgtatatcttttttttgtgtgtacaatgacggatac---aatcactttcagtttgtatattgctgcatagctctacttt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491486|gb|BU051409.1|BU051409
EST:     TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG                         GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: gi|67019503|gb|CO448252.1|CO448252
EST:     TGGCACGGAGGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG                         GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: gi|19436218|gb|BM952628.1|BM952628
EST:     TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG                         GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACC
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACC
EST: gi|19351127|gb|BM895659.1|BM895659
EST:     TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG                         GGTGTTCAACCA
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCA
EST: gi|32931849|gb|CF036661.1|CF036661
EST:     TGGCACAGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG                         GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: gi|87154041|gb|DY398830.1|DY398830
EST:     TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG                         GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
EST: gi|118406757|gb|EH038205.1|EH038205
EST:     TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG                         GGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG
genomic: TGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgttcgtggct ... tattttatagGGTGTTCAACCACTTCTTGATGGCGTGCTGGATTATCTACCGTGCCCGTTG