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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAGTCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataattaggggtaccctcaagacgcctaattctcagctggtaacccccatcag

Basic information

species Zea mays
transcript GRMZM2G055561_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAGTCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataattaggggtaccctcaagacgcctaattctcagctggtaacccccatcag
                        || || |||||||| |||||||| |||||||||||||| ||||||||||||||  |  | || ||| | ||||| ||| ||| | |    | || |  || | |||| ||  | |||||  |   ||| |    ||  |  || ||| |       ||||  || || || | |    || |        
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcataactagcaattaat-tcagtt-tgcct-gcatt--agctttggcatttac--ttgtttgggttctaggtcagac-tcttatcctgaac--acaatctggt----

upper sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 4
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAGTCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataattaggggtaccctcaagacgcctaattctcagctggtaacccccatcag
                        || || |||||||| |||||||| |||||||||||||| ||||||||||||||  | || || ||| | ||||| ||| ||| | |     ||| |  || | |||| ||   ||||||  |   ||| |        || ||    |||   | ||     | || ||| | ||    |    | | ||
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGGCAAAGCATTTATTCCATTgtaagtgcataactgacaattaat-tcagtt-tgcc-agcatt--agctttgcca-----tttacttgtttgtatttttaa---atcaaactcttatctaaccagtgac-tgag

upper sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 4
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGT--GAGTCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataattaggggtaccctcaagacgcctaattctcagctg-gtaacccccatcag
                        ||||| ||||| || || ||||||||||| |||||||| ||||||||||| || || || || || ||||| || |||  |||  | ||  |  |||| |   ||| |  | || ||  ||  | |  ||   ||    ||   |     |    | |  |    || ||  | | |  ||  ||        
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGGGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcatttt---ttaatcct-ttaagtgttgaacatctgattgg---tatgtcttaaatt----taataatatgtagtttacggttttgttgcctt------

upper sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 4
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAGTCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgt---cggggaccataattaggggtaccctcaagacgcctaattctcagctggtaacccccatcag
                        ||||| ||||| || || ||||||||||| |||||||| ||||||||||| || || || || || ||||| || ||| ||  ||      |     | | ||  ||   || ||   |  | |  ||    |   | |   ||||   |||     |        | ||| |    |               
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGAGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcattttttttattcctttaagtgctgaacatctgatcactatgtcttaaatttatggt--ttacggttttgttgatttttgctt---------------

upper sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 4
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAG-----TCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataat---taggggtaccctcaagacgcctaattctcagctggtaacccccatcag
                        |||||||||||||| || ||||| ||||| ||||| |  ||||| ||||| || || || ||||| ||||| |||||||||     |  ||   | | ||    | | | |||    |      |    | | | ||     ||  |   || | ||||  |  |  |  |||                         
AGAATGGCCAATTTACTCGGATGTTGCTGCGAAGGTGACGAGAGGTTACTTGTAGCAGAGTTTATGCCTAATGAAACACTAGCCAAACACCTTTTTCACTgtgagaatcatttttcctatatatagcctttcatttaataatcttgccatgctagtcttggaagttatggtgtctaagtgtactttttatgctactag------------------------

upper sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 4
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAGTCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataattaggggtaccctcaagacgcctaattctcagctggtaacccccatcag
                        || || || | | ||||||||||||| || || ||||| ||||||||||| || || || ||||| |||||||| ||| |||  || | | |         | | |  |||  |||  |  |   || |   | |   |  |    | |    |  |  |     | |     ||| |            
AGATTGGCAAATTTGCTTGGTTGTTGTTGTGAGGATAATGAAAGGTTGCTGGTGGCGGAATATATGCCCAATGAAACACTTGCAAAACACCTTTTCCATTgtaagtttttggtacagga-----ataactgttgtaaagctctcaatggttctttagcat-gtgttagaagatgttttttaacctttgcacttgttcctgatgtat--------