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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAGGCTGGAGAAGCGTATTTATATCCCACTTCCAGATTTCGAAAGCAGAAAGGCACTTATCAACATTAATCTTAGAACAGTTCAGgtatgtgttggagatatctttctggatcatctcgtgatatctttgtcccctttcctttgtttcattttgagtcattgcgaacaaattgattttatcag

Basic information

species Zea mays
transcript GRMZM2G054715_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054715_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g49000.1 (Oryza sativa), 5'ss of exon 6
GCGGAGGCTGGAGAAGCGTATTTATATCCCACTTCCAGATTTCGAAAGCAGAAAGGCACTTATCAACATTAATCTTAGAACAGTTCAGgtatgtgttggagatatctttctggatcatctcgtgatatctttgtcccctttcctttgtttcattttgagtcat-tgcgaacaaattgattttatcag---
 |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||| ||||| |||| ||| ||| |||||||  |   |  |||||||   | |  | |  |   ||| | || |||||||  ||   || ||  | ||  | ||    |    | | |  | |||   
ACGGAGGCTGGAGAAGCGTATTTATATTCCACTTCCAAATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatg-atattacttatcttttctg-tgttgtaattccatcctagttccctttctgtttactccttcagcgttttatgattgcctccttaatcaaacagtgc

upper sequence: GRMZM2G054715_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT1G80350.1 (Arabidopsis thaliana), 5'ss of exon 6
GCGGAGGCTGGAGAAGCGTATTTATATCCCACTTCCAGATTTCGAAAGCAGAAAGGCACTTATCAACATTAATCTTAGAACAGTTCAGgtatgtgttggagatatctttctggatcatctcgtgatatctttgtcccctttcctttgtttcattttgagtcattgcgaacaaattgattttatcag
| ||||| |||| || ||||| |||||||||||||||||||| |||||  | ||||| |||||||| || ||||| ||||||||| ||||  |  |||  ||||  ||  |  | || ||||  | |||| | | |   | |       ||| ||| ||  ||   |||||   | | ||| ||||
GAGGAGGTTGGAAAAACGTATATATATCCCACTTCCAGATTTTGAAAGTCGTAAGGCTCTTATCAATATCAATCTGAGAACAGTTGAGgttag--ttgtggatacattgttacaaca-ctcgcaa-atctctctactggtccaacgcaatcaattt-agcaat---gaacattgtcacttt-tcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211073705|gb|FL043069.1|FL043069
EST:     ATTTCGAAAGCAGAAAGGCACTTATCAACATTAATCTTAGAACAGTTCAG                         ACATGCCATGATGCACGTGTCAAAATTGTTGGCGCTTAATTTTGTGGAATC
genomic: ATTTCGAAAGCAGAAAGGCACTTATCAACATTAATCTTAGAACAGTTCAGgtatgtgttg ... attttatcagACATGCCATGATGCACGTGTCAAAATTGTTGGCGCTTAATTTTGTGGAATC