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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGGCCAACACGCCCTTGTTGACTGGGTTTGGAACTATTTTGCATGTGAGCGCTCTGATAGATTAACCACACAGCGTGCCACTGTCAGCAATAAAACgtaagatcttctatgtctcccttttgagaaatgttctattccataatctgatatacttacagtatctataaataacttcgttatatactaactaaagtggtgctggtcacag

Basic information

species Zea mays
transcript GRMZM2G053676_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76016485|gb|DT943655.1|DT943655
EST:     CAGCAATAAAAC                         ACCACTCTATTTTCAACATCAAGGTCATTCAAGGACAATTGTTGGGATTCA
genomic: CAGCAATAAAACgtaagatctt ... ctggtcacagACCACTCTATTTTCAACATCAAGGTCATTCAAGGACAATTGTTGGGATTCA
EST: gi|5895760|gb|AW037006.1|AW037006
EST:     GAGCGCTCTGATAGATTAACCACACAGCGTGCCACTGTCAGCAATAAAAC                         ACCACTCTATTTTCAACATCAAGGTCATTCAAGGACAATTGTTGGGATTCA
genomic: GAGCGCTCTGATAGATTAACCACACAGCGTGCCACTGTCAGCAATAAAACgtaagatctt ... ctggtcacagACCACTCTATTTTCAACATCAAGGTCATTCAAGGACAATTGTTGGGATTCA
EST: gi|60341430|gb|DN208403.1|DN208403
EST:     GAGCGCTCTGATAGATTAACCACACAGCGTGCCACTGTCAGCAATAAAAC                         ACCACTCTATTTTCAACATCAAGGTCATTCAAGGACAATTGTTGGGATTCA
genomic: GAGCGCTCTGATAGATTAACCACACAGCGTGCCACTGTCAGCAATAAAACgtaagatctt ... ctggtcacagACCACTCTATTTTCAACATCAAGGTCATTCAAGGACAATTGTTGGGATTCA